Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3038 |
Symbol | |
ID | 7973758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3197643 |
End bp | 3198641 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793622 |
Product | 40-residue YVTN family beta-propeller repeat protein |
Protein accession | YP_002944923 |
Protein GI | 239816013 |
COG category | [S] Function unknown |
COG ID | [COG3391] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.355652 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGCAAC CCTTCCTGCC CCCGCCTGCG CGCACCCTGG TCCGCGCGGC CGCTAGCGCG CTCGCGCTGG CCGCCGCGAG CGCCGCCGCG CTGGCGCAGG GCACCGCCTA TGTGTCGAGC GAAAAGGACA GCGCGCTGAC GATGATCGAC CTGGCGACCC TGGCCGTGAA GGGCACGATC CCGACCTGCA AGCGCGCGCG CCACATCCAG CTCACGCCCG AGCGCCAGAT CATGGTGGCC TGCACCGATT CCAACCAGGC GGACCTGATC GACCCCGCGA GCGGCAAGTC GGTGCGGCGC ATTCCGCTGG GCGACGAGCC CGAGGCCTTC GACCTGTCGC CGGACGGCAA GGTCATCTAC GTTTCCAACG AGGACGCGGG CGAGGCCAGC TTCATCGACG CGGCCAGCGG CAAGAAGCTG CGCTCGGTCA AGGTGGGCGC GGAGCCCGAA GGCGTCAAGG TCAGCGCCGA CGGCAAGACG CTGTACATCA CGTCCGAGGT GGCGAGCCTG GTGCACGTGA TCGACACGGC CAGCGGCAAG GTCGTGAAGA ACATCAAGGT CGGCAAGCGC CCGCGGCGCA TGGCCATCAC GCCGGACGGC AAGGAGCTCT GGGTCACCAA CGAACTGGGC GCGAGCGTCA GCATCGTCTC GACTGCGACG AACGAGGTGA TCGACACGCT CAAGTTCGAG GTGAAGGGCG CGCGCGCCGA GGACATCACG CCCGTGGGCA TCCAGATGAC AAGCGACGGC AAGCGGGCCT TCGTGGGCCT GGGCCGCGCC AACCACGTGG CCTTCGTCGA CGTGGCCGGC CGCAAGGTCG GCTCGCTGGT GCTGGTCGGC AAGCGGGCCT GGAACGTCAC GCTCGACAAG GCGCAGGCGC GGCTCTACGT GGTCAACGGC TTGAGCGACG ACGTGACGGT GGTCGACGTG GCCGGCGCCA AAGCCATCAA GAGCGTTCCG GTAGGGCGCG TGCCCTATGG GCTCGTGATC GTCGAATGA
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Protein sequence | MPQPFLPPPA RTLVRAAASA LALAAASAAA LAQGTAYVSS EKDSALTMID LATLAVKGTI PTCKRARHIQ LTPERQIMVA CTDSNQADLI DPASGKSVRR IPLGDEPEAF DLSPDGKVIY VSNEDAGEAS FIDAASGKKL RSVKVGAEPE GVKVSADGKT LYITSEVASL VHVIDTASGK VVKNIKVGKR PRRMAITPDG KELWVTNELG ASVSIVSTAT NEVIDTLKFE VKGARAEDIT PVGIQMTSDG KRAFVGLGRA NHVAFVDVAG RKVGSLVLVG KRAWNVTLDK AQARLYVVNG LSDDVTVVDV AGAKAIKSVP VGRVPYGLVI VE
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