| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3034 |
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| Symbol | |
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| ID | 7973754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3192275 |
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| End bp | 3194500 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793618 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_002944919 |
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| Protein GI | 239816009 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0831829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGGCC AGGCGCAGGA GGCCGCGCCG CAGGCGGGCA CGCTGCCGGC CGTCGAGGTG
GTGGCCACCA CGCCCGTGCC GGGCATCGAG GTGCCGAAGG ACCAGATCCC GTCCAACGTG
CAGACCGCCG ACGACCGGCA CCTGCGCCGC GCGCAGAGCC TGAACCTGCC GGACTTCATG
GCCACGCAGC TGCCCAGCGT GAACGTGAAC GAGATCCAGG GCAATCCGTT CCAGGTCGAC
GTGAACTACC GCGGCTTCAG CGCGAGCCCG GTGCTCGGAA CGCCCCAGGG CCTGTCGGTG
TACCAGGACG GCGTGCGCAT CAACGAGCCC TTCGGCGACG TGGTGAACTG GGACCTCATC
CCGAAGGCCG CCATCTCGAG CATCACGCTG CTGCCGGGCT CCAACCCGCT GTTCGGCCTC
AACACGCTCG GCGGTGCGCT GTCGCTGCAG ACCAAGCGCG GCGACACGCA TCCGGGCACC
GAGCTGGAAC TGCAGGCCGG CTCCTTCGGC CGCGTGAGCA CCGAGCTCAC GCACGGCCGC
AAGCTGGCCG AAGGCGGGCA CCTGTTCCTT GCGCTCGGCG GCCTCAACGA GGACGGCTGG
CGCAACTACT CGCCTTCGCG CGTGCGCCAG CTGTTTGCGA AGGTGGGGCA GGACAGCGGA
AAGCTCTCCT GGGACCTGAG CTTCACCCAT GGCGACAACC GGATGATCGG CAACGGCCTG
CTGCCCGAGT CGATGCTGAT GCAGAACCGC AAGCAGGTGT ACACGCGGCC CGACCGCACC
GAAAACCGCA TGTCGATGCT CACGCTCAAT GCCAGCTACC GCCTGAGCGA CGTGCAGACG
ATCTCCATGA CGGCTTACAC GCGGCGCTCG CGCTACAGCA CGCTCAACGG CGACCTCAAC
GACGGTTTCA ATCCGCCGGA CAACGAAGCC ACGGGCGTGG AGAACCGCAC CTACACGCGC
CAGCGCAGCG AAGGCGTGGC GCTGCAGTCG ACCTATACCG CGGGCATTCA CCAGCTCACT
TTCGGCGCCT CCGTGGACCG TGCGCGCACG CACTTCCGCC AGACCGAGGC CGAGGGCATG
CTCGACTCCA CGCGCGCGGT GGTGCCGCAG GAAGAAGCCG AAGTCGATGC GCTGCTCGCG
GGCAAGAGCC GCACCGCGAG CATCTATTTT TCCGACCTGG TGAGCCTGCA GCCGAACCTG
CAGCTGAGCC TTTCGGGCCG CTACAACGAC ACTCGAGTGA GCACCCGCGA CGACGGGCGC
GCCTTGCTCG GGCTGTCCAC CCGGCTCGAT GGCGAAGGCC ATTACAAGAA GTTCAATCCT
GCCATCGGCC TCACCTGGCA GGCTACGCCG CGGCTCACGG CCTACGCGGG CTGGAGCCAG
GGCAGCCGCG CGCCGAGCCC GATCGAGCTC GGCTGCTCCG ATCCGGCCAA CGCCTGCGTG
CTGCCCAATG CGCTGCAGTC CGATCCGCCG CTCAAGCAGG TGGTGTCGCA GACCTTCGAA
ACCGGGCTGC GCGGCACGCT CGAGCCAGGC ATGCGGTGGA ATGCCTCGGT GTTCCGCACC
GTCAACAAGG ACGACCTGCT GTTCGTGAGC AGCGGGCTTT CGCGCGGCTA CTTCAGCAAC
TTCGGGCGCA CCCTGCGCCA GGGCGTGGAG CTCGGGCTCT CGCAGCAGAC CGAACGCGTC
GACTGGTCGC TGTCGTACAG CTACCTGCGC GCGAGGTACG ACTCGCCGGC CTGCCTGGTG
GCCGAAGCCA ACAGCAGCGC CGAGACCAGC CCCGCCTGCA CCGGCGAGGG CGAGATCGCG
GTGCGCCGCG GCGACCGCCT GCCGGGACTG CCGGCGCATT CGCTCAAGCT CAATGTCGAC
TGGCGCGTGA CGCCCGAGTG GACGCTGGGC GCGCAGTACC GCGTGTATTC GAAGCAGACG
GTGCGCGGCA ACGAGAACGG CCTGCACGCG CCCGACGGGG CCGACTTCAG CGGCAGCGGC
CGCATCGGCG GCTACGCGCT GCTCGACCTC ACGACGCGCT GGAAGCTCGG GCCCAACGTG
GAGCTTTTTG CCAAGGTGGC GAACGTGTTC AACCGGCGCT ACGCCACCGC CGGCCAGCTG
GGCCGCAGCG GCTTCGATGC GAGCGGCGCG GTGCTGGCGC CTGATGCATG GCGCAACGTG
CAGTTCGTGG CTCCCGGCGC GCCGCGCGCG GTGTGGATCG GCATGCGGGT GCAACTGGGC
GTCTGA
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| Protein sequence | MPGQAQEAAP QAGTLPAVEV VATTPVPGIE VPKDQIPSNV QTADDRHLRR AQSLNLPDFM
ATQLPSVNVN EIQGNPFQVD VNYRGFSASP VLGTPQGLSV YQDGVRINEP FGDVVNWDLI
PKAAISSITL LPGSNPLFGL NTLGGALSLQ TKRGDTHPGT ELELQAGSFG RVSTELTHGR
KLAEGGHLFL ALGGLNEDGW RNYSPSRVRQ LFAKVGQDSG KLSWDLSFTH GDNRMIGNGL
LPESMLMQNR KQVYTRPDRT ENRMSMLTLN ASYRLSDVQT ISMTAYTRRS RYSTLNGDLN
DGFNPPDNEA TGVENRTYTR QRSEGVALQS TYTAGIHQLT FGASVDRART HFRQTEAEGM
LDSTRAVVPQ EEAEVDALLA GKSRTASIYF SDLVSLQPNL QLSLSGRYND TRVSTRDDGR
ALLGLSTRLD GEGHYKKFNP AIGLTWQATP RLTAYAGWSQ GSRAPSPIEL GCSDPANACV
LPNALQSDPP LKQVVSQTFE TGLRGTLEPG MRWNASVFRT VNKDDLLFVS SGLSRGYFSN
FGRTLRQGVE LGLSQQTERV DWSLSYSYLR ARYDSPACLV AEANSSAETS PACTGEGEIA
VRRGDRLPGL PAHSLKLNVD WRVTPEWTLG AQYRVYSKQT VRGNENGLHA PDGADFSGSG
RIGGYALLDL TTRWKLGPNV ELFAKVANVF NRRYATAGQL GRSGFDASGA VLAPDAWRNV
QFVAPGAPRA VWIGMRVQLG V
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