| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3028 |
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| Symbol | |
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| ID | 7973748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3186766 |
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| End bp | 3187470 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793612 |
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| Product | ribulose-phosphate 3-epimerase |
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| Protein accession | YP_002944913 |
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| Protein GI | 239816003 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0136369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGAACA CAAGAAACGC CATGCGCATC GCGCCCAGCC TGCTGTCGGC CAACTTTGCG
CGGCTCGGCG AAGAGGTCAC GGCGGTCGTC GAGGCCGGTG CCGACCTGAT CCATTTCGAT
GTCATGGACA ACCACTATGT TCCAAATCTG ACAATTGGTC CGCTGGTCTG CGAGGCCATC
AAGCCCTATG CGACGGTGCC GATCGACGTG CACCTGATGG TCAAGCCGGT CGATGCGCTG
ATCCCGATGT TCGCGCAGGC CGGCGCCTCG ATCATCTCCT TCCACCCCGA GGCCAGCGAG
CACATCGACC GCACCATCCG GCTGATCCGG GACAGCGGCT GCAAGGCCGG CCTGGTGCTC
AACCCCGCCA CGCCGCTCGC GGTGCTCGAC CATGTGCTGG ACCAGCTCGA CCTGGTGCTG
CTGATGTCGG TCAACCCGGG CTTCGGCGGA CAGAGCTTCA TCGAGAGCGT ACTGCCGAAG
ATCGAGGCAG TGCGCCGCCG CATCGACGCG AGCGGGCGCG AGATCTGGCT GGAGGTCGAT
GGCGGCGTGA AGCCCGACAA CGCCGCGCGC ATCGGCGCCG CCGGGGCCGA CACGCTGGTG
GCGGGCTCGG CCGTGTTCAA CGGCGGCCGC TACCGCGAAG CGATTGGCGC CATCCGCGCA
GCGGCGCTGC AGGGCCGCGA GTCCATGGAA GGGCGTCCCG CATGA
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| Protein sequence | MQNTRNAMRI APSLLSANFA RLGEEVTAVV EAGADLIHFD VMDNHYVPNL TIGPLVCEAI
KPYATVPIDV HLMVKPVDAL IPMFAQAGAS IISFHPEASE HIDRTIRLIR DSGCKAGLVL
NPATPLAVLD HVLDQLDLVL LMSVNPGFGG QSFIESVLPK IEAVRRRIDA SGREIWLEVD
GGVKPDNAAR IGAAGADTLV AGSAVFNGGR YREAIGAIRA AALQGRESME GRPA
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