| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3024 |
|---|
| Symbol | |
|---|
| ID | 7973744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3181919 |
|---|
| End bp | 3183958 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644793608 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_002944909 |
|---|
| Protein GI | 239815999 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.054383 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCG ACAACCTCGC CTTGCGCACG CAGTGCGCCA ACGCCATCCG CGCGCTGGCC
ATGGACGCCG TGCAAGCCGC CAATTCGGGC CACCCGGGCA TGCCGATGGG CATGGCCGAC
ATCGCCGAGG CGCTGTGGCG GCACCGCCTG CGGCACGACC CGGCCGATCC GCGCTGGATG
AACCGCGACC GCTTCGTCGT GTCCAACGGC CACGGCTCGA TGCTGCTGTA TGCGCTGCTG
CACCTGAGCG GCTATGCGCT GCCGATGGAG GAGCTGCGGC GCTTCCGCCA ATTGCATTCG
CGCACGCCGG GCCACCCCGA GGTCGGCGTC ACGCCCGGCG TGGAAACGAC CACCGGGCCG
CTGGGGCAGG GCATCAGCAA TGCGGTGGGC ATGGCGCTGG CCGAGAAGCT GCTGGCCGAG
GAATTCAACC GTCCCGGCCA CGAGGTGATC GACCACCGCA CCTATGTGTT CCTGGGCGAT
GGCTGCCTGA TGGAAGGCAT CAGCCACGAG GCCTGCTCGC TCGCGGGCAC CTGGCGCCTG
AAAAAGCTGG TGGCGTTCTA CGACGACAAC GGCATCTCGA TCGACGGCGA GGTCGGCGGC
TGGTTCAGCG ACGACACGCC GGGCCGCTTC GAAGCCTACG GCTGGACCGT GCTGCGCGAT
GTCGACGGCC ACGACGCCGC GGCGCTCGAC GCAGCCATCG CGCAAGCCAC GGCTTCGGAC
CGCCCGGTGC TGGTGTGCTG CAAGACGCGC ATCGGCCAGG GCTCGCCGAA CCGCGCCGGC
ACCGCCAAGG CACACGGCGA GGCATTGGGC GAGACCGAGA TCGCGCTGAC GCGGCAGGCG
CTCGGCTGGA GCGCCGCGCC CTTCGAAGTG CCGGCGGATG TTGCAGAGGC CTGGTCGGCG
CGCGAATCGG GCGCCGCGCT GCACAAGGCC TGGCAGGAGC GCTTCGCCGT CTATGCACAG
GAACATCCGG CGCTTGCCCG CGAGCTGCTG CGGCGCCACC GCACCGATGC GCCGCTCACC
GCGAAGGCCG AGGCGGCACT GGCTTCGGCC GCGTCGGGCG CGGAACAGCG CAAGGCCTCG
GTTGCCACGC GCAAGGCCTC GCAGCAGGTG CTCGACGAGG TCGGCCCCGC GATGCCCGAG
CTGATCGGCG GCTCGGCCGA CCTCACGGGA TCGAACCTCA CCGACTGGAA GGGCCACCGC
GCGCTCAAGG GTACCGGCAC CGGCAACCAC GTGCACTACG GTGTGCGCGA GTTCGGCATG
GCGGCCATCA TGAACGGGCT CGCGCTGCAT GGCGGCTTCC GTCCCTTCGG CGGCACCTTC
CTGACTTTTT CCGACTACGC GCGCAACGGC GTGCGCATGT CGGCGCTGAT GAAGCTGCCG
GTAATCTACG TCTTCACGCA CGACTCCATC GGGCTCGGCG AGGACGGCCC GACGCACCAA
CCGGTGGAGC ATGCCTCGAG CCTGCGGCTG ATTCCCGATG TCGATGTCTG GCGCCCGGCC
GATGCCACTG AGACGGCCGT GGCCTGGCGC CAGGCGCTGC GCCGCGTGGA CGGGCCGAGC
TGCCTGCTGC TGACGCGCCA GGCGCTGCCG CATGCCGGCG ACGGCGATGA GCGCATCGAG
TCGATCGCGC GCGGCGCCTA TGTGCTGCGC CGCCCGGAGG CCGAGTGCGT GGCGCTGCTG
GCAAGCGGCT CCGAAGTGGG CGTCGCCCTG GCCGCGGCGG CCCTGCTGGC GCAGGAGGGC
ATCGAGGCGC GCGTGGTGTC CGTGCCGTGC ATGGACGTGT TCGAACGGCA GGATGCCGAA
TGGCGCCACG CGGTCGTTCC GCGCCACCTG CCGCGCGTCG CGGTGGAGGC CGGCAGCACG
GGCCTGTGGT GGAAGTTCGT CGGCGAATAC GGCGACGTGG TCGGGCTCGA CCGCTTCGGC
GAATCGGCGC CGGCCGGGGA GCTCTTCAAG CTGTTCGGCC TCACGGCCGA AGTGGTGGCC
GAGCGCGCCC GCCGCCTGCT CGCGAACGCC GCGCTGGCCA ACGTGAAAGA GGCCGCATGA
|
|---|
| Protein sequence | MTIDNLALRT QCANAIRALA MDAVQAANSG HPGMPMGMAD IAEALWRHRL RHDPADPRWM
NRDRFVVSNG HGSMLLYALL HLSGYALPME ELRRFRQLHS RTPGHPEVGV TPGVETTTGP
LGQGISNAVG MALAEKLLAE EFNRPGHEVI DHRTYVFLGD GCLMEGISHE ACSLAGTWRL
KKLVAFYDDN GISIDGEVGG WFSDDTPGRF EAYGWTVLRD VDGHDAAALD AAIAQATASD
RPVLVCCKTR IGQGSPNRAG TAKAHGEALG ETEIALTRQA LGWSAAPFEV PADVAEAWSA
RESGAALHKA WQERFAVYAQ EHPALARELL RRHRTDAPLT AKAEAALASA ASGAEQRKAS
VATRKASQQV LDEVGPAMPE LIGGSADLTG SNLTDWKGHR ALKGTGTGNH VHYGVREFGM
AAIMNGLALH GGFRPFGGTF LTFSDYARNG VRMSALMKLP VIYVFTHDSI GLGEDGPTHQ
PVEHASSLRL IPDVDVWRPA DATETAVAWR QALRRVDGPS CLLLTRQALP HAGDGDERIE
SIARGAYVLR RPEAECVALL ASGSEVGVAL AAAALLAQEG IEARVVSVPC MDVFERQDAE
WRHAVVPRHL PRVAVEAGST GLWWKFVGEY GDVVGLDRFG ESAPAGELFK LFGLTAEVVA
ERARRLLANA ALANVKEAA
|
|---|
| |