Gene Vapar_3017 details

Gene Information

• Locus tag: Vapar_3017
• ID: 7973737
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3173682
• End bp: 3174146
• Gene Length: 465 bp
• Protein Length: 154 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644793601
• Product: NADH dehydrogenase (ubiquinone) 24 kDa subunit
• Protein accession: YP_002944902
• Protein GI: 239815992
• COG category: [C] Energy production and conversion
• COG ID: [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAATC TGGGCATCGC GGCATCCATC GCCGCCGCGC ACAAGGACAG GCCGGGCGGG 
CTGCTTCCTG CGCTCCACGG CATCCAGGAC GCGCTGGGGC ATGTTCCGCC CGACGCGGTC 
CCGCTCATCG CCGAGCAGTT CAACCTGTCG CGCGCCGAGG TACATGGCGT GGTGAGCTAT 
TACCACCACT TCCGCTCGGC CCCGGCGGGC CGGCTGCTGG TGCAGGTCTG CCGCGCCGAG 
GCCTGCAAGG CGATGGGCGC GGACGCGCTG CTCGCGCATG CCGAGCAACG CCTGGGCTGC 
GGCGTGCACG GCACCTCGGC CGACGGCCAG TGCTCGCTGG AGCCGGTGTT CTGCCTCGGC 
CTGTGCGCCT CGTCGCCCGC CATCGCGGTG AACGGCGAGG TGCATGCGCG CATCACGCCG 
GCGCTGTTCG ACGACATCGC CCGGGAAGCA CGGAGCGCCT CATGA 

 

Protein sequence

MNNLGIAASI AAAHKDRPGG LLPALHGIQD ALGHVPPDAV PLIAEQFNLS RAEVHGVVSY 
YHHFRSAPAG RLLVQVCRAE ACKAMGADAL LAHAEQRLGC GVHGTSADGQ CSLEPVFCLG 
LCASSPAIAV NGEVHARITP ALFDDIAREA RSAS