Gene Vapar_3015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3015 
Symbol 
ID7973735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3171635 
End bp3172306 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content69% 
IMG OID644793599 
Producthypothetical protein 
Protein accessionYP_002944900 
Protein GI239815990 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.878418 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCTGC TGCTGAGCAT CGTGTGCGCC GTTGTTGCGT TGGCAGGGTG CGTCAGCACG 
CCGCCCACAC CGACGCAACC CGGCACCGGA ACCGGGCTGT CGTACGTGCC CATGGTCGCC 
ATGGAAGGCG TGGACCGGGC CCGCTACGAC AGCGACGTGG CCGATTGCCG CACGGCGGCA 
ATGCGGATCA CCGCGCGCAG CGAGACCGGC GACGCCATGT GGCTCGCCCT GGGCCTGGGC 
CTGATCACTG TCCATGGACA GGGCATCGTG GCCGCGGCCT CGTACACCGG CATTTCGGCC 
GCGGTGATCG ACATGTCCTA CCGGCCCAGC GCGGAGCTGA TTGCCGAGCA CCAGCAGATC 
GCCGTGGTGC ACTGCATGGC CAAGCGCGGC TATCGCAACC TCGACCCGAA CGTACGCGAC 
ACCTTCTACG GCCATGCCTT CAATCCGGAA GTGGTGATGG CGCCGCGCCG GACCGGGGTC 
GACACCTACA ACGCCGAAGT GCTTGCCAAG GCCGGGCAGT GCAGCATCCA GCCGCGCGCC 
GAGCTCACCG CCAAGGGCCC GGGCTACGAG GCGTACAGCG TGCCCTGCTC GAACGGCACG 
GCCTGGGCCG TGCGCTGCGA ATTCGGCAAG TGCCGCGTGC TGGGCCAGTC GGCCGTCCGG 
CGCTCCTCCT GA
 
Protein sequence
MKLLLSIVCA VVALAGCVST PPTPTQPGTG TGLSYVPMVA MEGVDRARYD SDVADCRTAA 
MRITARSETG DAMWLALGLG LITVHGQGIV AAASYTGISA AVIDMSYRPS AELIAEHQQI 
AVVHCMAKRG YRNLDPNVRD TFYGHAFNPE VVMAPRRTGV DTYNAEVLAK AGQCSIQPRA 
ELTAKGPGYE AYSVPCSNGT AWAVRCEFGK CRVLGQSAVR RSS