| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3011 |
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| Symbol | |
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| ID | 7973731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3168223 |
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| End bp | 3168903 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793596 |
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| Product | two component transcriptional regulator, winged helix family |
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| Protein accession | YP_002944897 |
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| Protein GI | 239815987 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.267721 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTGC TGCTGGTCGA AGACGATCCC TCGATGCAGG TCACCCTGCA GCGCGCCCTC
GCCCGCAGCA GGATCGACGT GCGCATCTGC GGCGACGGCG CCCTGGCCGT CGAGCAATGG
CGCGCCCTGG AGCCCGACGT GGTGGCGCTC GACCTGAGCC TGCCCAACCT CGACGGCCTG
CAGGTGCTGG CCCAGGCGCG CGCCGCGGGG CTGCGCACGC CGGTGCTGCT GCTCACGGCC
CGCGGCACGG TCGGCGACCG CATCATGGGC CTGAACGCCG GCGCCGACGA CTACCTGCCC
AAGCCCTTCG ACCTTGACGA GCTGGAAGCA CGCATCCGCG CACTGCGCCG GCGCCACCAG
AACGCCGGTG CCGACGCGGT CCTGAACCCG CAGGAGGTGG GCGGGCTGCG CTTCGACCCC
GAGAGCGGCG CCATCTATCA CCGCGCCGGC ATCCTGGAGC TCACGCCGCG CGAACTGGCG
CTGCTCAAGG CGCTGATGAT GAAGCCCGGC CACGCGGTGA GCAAGGAGCG GCTCTTCGAA
CTCGTGTTCC CGGGCGAGAC CGACGTGCAG TACGAGGCCA TCGAGGTGGT GGTGTATCGC
CTGCGCAAGA AGCTCGCGGG CACCGGCGCG GCGCTGATGA CGCTGCGCGG ACTGGGCTAC
CTGCTGCGCG CCGAGCCATG A
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| Protein sequence | MKLLLVEDDP SMQVTLQRAL ARSRIDVRIC GDGALAVEQW RALEPDVVAL DLSLPNLDGL
QVLAQARAAG LRTPVLLLTA RGTVGDRIMG LNAGADDYLP KPFDLDELEA RIRALRRRHQ
NAGADAVLNP QEVGGLRFDP ESGAIYHRAG ILELTPRELA LLKALMMKPG HAVSKERLFE
LVFPGETDVQ YEAIEVVVYR LRKKLAGTGA ALMTLRGLGY LLRAEP
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