| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3006 |
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| Symbol | |
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| ID | 7973726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3162403 |
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| End bp | 3163455 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793591 |
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| Product | peptidase S58 DmpA |
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| Protein accession | YP_002944892 |
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| Protein GI | 239815982 |
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| COG category | [E] Amino acid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3191] L-aminopeptidase/D-esterase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGCGA ACTCCCTGCC CTACATCGGC ACCCTGCTGC AAGGCGCGCG CAACGCCATC
ACCGACGTCG AAGGCGTCAC GGTCGGCCAC CAGACGCTCG ATGACGGCAG CGTGCAGACC
GGCGTGACGG TGATCCGACC GCATGCGGGC GATCCGTTCC GCGACAAGGT ACCGGCCGCC
GCCGTGGTGC TCAACGGCTT CGGCAAGAGC GTGGGGCTGG TGCAGCTCGC CGAGCTCGGC
GTGCTGGAGA CGCCGATTGC GCTGACCAAC ACGTTTTCGG TCGGCACGGT GGCCACGGCG
CAGATCCGCC ATTGCATAGC GGCCAACCCC GAGAGCGGCC GGTCGCTGCC GACGGTGAAT
CCGCTGGTCT TCGAGTGCAA CGACGGTTTT CTCAACGACA TCCAGCGGCT GGCCGTGACC
GAGGCGGACT ACCTGCGCGC GCTCGAGAGC GCCGGCCCCG ACTTCGCGCA GGGCTCGGTC
GGCGCGGGGC GCGGCATGTC GAGCTTCCAG CTCAAGGGCG GCATCGGCAG CGCCTCGCGG
CGCGTCTCGG CGCCCGCGGG CGAATTGCAC ACCGTGGGCA CGCTGGTGCT CGCGAACTAC
GGGCGCCAGC CGCAGCTGGT GCTGGCCGGG CATCCGGTCG GCGAGCGGCT GGCCGCGCAC
GGCACGCGCG AATCCAGGGA GCCCGAGAAG GGCTCGATCA TCATCGTCGT CGCCACCGAT
GCACCGCTCG ATGCGCGCCA GCTGCGCCGC CTCGCGCTGC GTGCGGGCGC GGGGCTGGCG
CGCACCGGCT CGGTCTTCGG CCATGGCAGC GGCGACATCG TGCTGGCCTT CTCGACCGCC
TACACCGTGC CCGACCGCGT CGATCGCCCG ATGCCGGCCA TCGCGATGGT GCACGACGGG
TTGCTCGACG GCCTCTTCCA GGCCGCGGCC GACAGCACGG AGCAGGCGAT CCTGCACGCG
CTCTGGCGCG CGACGGCCGT GACAGGCCGC GATGGCAATC ACCGGGCAGC GCTGTCGGAA
CTGCTGCCGC CCTCTTCCCT TTCTTCTCTT TAG
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| Protein sequence | MPANSLPYIG TLLQGARNAI TDVEGVTVGH QTLDDGSVQT GVTVIRPHAG DPFRDKVPAA
AVVLNGFGKS VGLVQLAELG VLETPIALTN TFSVGTVATA QIRHCIAANP ESGRSLPTVN
PLVFECNDGF LNDIQRLAVT EADYLRALES AGPDFAQGSV GAGRGMSSFQ LKGGIGSASR
RVSAPAGELH TVGTLVLANY GRQPQLVLAG HPVGERLAAH GTRESREPEK GSIIIVVATD
APLDARQLRR LALRAGAGLA RTGSVFGHGS GDIVLAFSTA YTVPDRVDRP MPAIAMVHDG
LLDGLFQAAA DSTEQAILHA LWRATAVTGR DGNHRAALSE LLPPSSLSSL
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