| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3005 |
|---|
| Symbol | |
|---|
| ID | 7973725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3161470 |
|---|
| End bp | 3162390 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644793590 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_002944891 |
|---|
| Protein GI | 239815981 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAG CCACCGGCGT GACTGCCGAA TCGATCACTC CGCCCGTCGT GGCGGTTCAA
ACTGCGGGCA AGGTCCGCAC GCCCTGGGGC GAATGCTGGC GCCGCTTCAA GAAGCAGCCC
GTGGGCATCG TTGCGGCGCT GTTCGTGCTG CTGCTGGTGT TCGTCGCGGT GTTCGCGCCG
TGGATCGTGC CCTTCGACGC GGAGAACTTC TTCGACTACG ACATGCTGAA CACGGGGCCT
TCGGCCACGC ACTGGTTCGG CGTCGATCCG CTGGGCCGCG ACATCTTCAG CCGCATCCTG
ATGGGAGCTC GCATTTCGCT GATGGCGGGT TTTCTCTCGG TGCTGGTGGG CGGCTTCGTC
GGCACGGCCT TCGGCCTGCT CGCGGGCTAC TACGAAGGCT GGTGGGACCG CATCGTGATG
CGCATCTCCG ACGTGCTCTT TGCCTTCCCC GGCATTCTTC TGGCGCTCGG CGTGGTCGCC
ATTCTCGGCA GCAGCATGAC CAACGTGGTG GTGGCGGTGT CGGTGTTCAG CGTGCCGGCC
TTCGCGCGGC TGGTGCGCGG CAACACGCTG GTGCTCAAGC AGCAGACCTA CATCGAGGCC
GAGCGCAGCA TCGGCGCCTC GGACTGGACC ATCATCGTGC GGCACATCCT GCCGGGCACC
ATCTCGTCGA TCGTCGTGTA TTTTTCGATG CGCGTGGGCA CCTCGATCAT CACGGCCGCC
AGCCTCTCGT TCCTGGGCAT GGGCGCGCAG CCGCCCACGC CCGAATGGGG CGCCATGCTC
AGCGAAGCCC GCGCCGACAT GGTGACCTCG CCGCACGTGG CGCTGTTCCC GAGCCTGGCC
ATCTTCTTCA CCGTGCTGGC GTTCAACCTG CTGGGCGATG CACTGCGCGA CGCGCTCGAT
CCGAAAATCG ACCGCGAATA A
|
|---|
| Protein sequence | MTQATGVTAE SITPPVVAVQ TAGKVRTPWG ECWRRFKKQP VGIVAALFVL LLVFVAVFAP
WIVPFDAENF FDYDMLNTGP SATHWFGVDP LGRDIFSRIL MGARISLMAG FLSVLVGGFV
GTAFGLLAGY YEGWWDRIVM RISDVLFAFP GILLALGVVA ILGSSMTNVV VAVSVFSVPA
FARLVRGNTL VLKQQTYIEA ERSIGASDWT IIVRHILPGT ISSIVVYFSM RVGTSIITAA
SLSFLGMGAQ PPTPEWGAML SEARADMVTS PHVALFPSLA IFFTVLAFNL LGDALRDALD
PKIDRE
|
|---|
| |