| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2981 |
|---|
| Symbol | |
|---|
| ID | 7972257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3137555 |
|---|
| End bp | 3138592 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644793566 |
|---|
| Product | sulfate ABC transporter, periplasmic sulfate-binding protein |
|---|
| Protein accession | YP_002944867 |
|---|
| Protein GI | 239815957 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1613] ABC-type sulfate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00971] sulfate/thiosulfate-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTTC GCCGCGACTT TATCAAGCTT TCCCTGGGTG CCGGCGTGGC CGGTGCCATG
GCCCTGACGG CATTGCCGTC GTTCGCGCAG GGCGCGGCCC CCGTGACGCT GCTCAACGTG
TCGTACGACC CGACGCGCGA GCTGTACGTC GACTACAACC GCGCCTTCGC CAAATACTGG
AAGGGCAAGA CCGGCCAGGA CGTGACCATC AAGCAGTCGC ACGGCGGCTC GGGCAAGCAG
GCCCGCTCGA TCATCGACGG CATCGATGCC GACGTTGCCA CTCTGGCGCT GGGCGGCGAC
ATCGACGCGC TCGCCACGCA CGGCGGCCTC GTCAAGGCCG ACTGGCAAAA GCGCCTGCCG
CAGAACTCGG CGCCCTACAC CTCGACCATC GTGTTCCTTG TGAAGAAGGG CAATCCCAAG
GGCCTGAAGG ACTGGGACGA CCTCGTGAAA CCCGGCGTGC AGGTGATCAC GCCCAACCCC
AAGACCTCCG GCGGCGCGCG CTGGAACTAC CTGGCTGCCT GGGAATTCGC CAAGCGCAAG
TACGGCAGCG ACGCCAAGGC CAAGGAATAC ATCGGCAGCC TGTTCAAGAA CGTTCCGGTG
CTCGATGCCG GCGCGCGTGG CGCCACCATC ACCTTCGTGC AGCGCGGCGT GGGCGACGTG
CTGCTGGCCT GGGAGAACGA AGCCTTCCTG GCGCTGAAGG AATTCGGCGC CGAGAAGTTC
GAGATCGTGG TGCCGTCGAT CTCGATCCTG GCCGAGCCCA CCGTGGCGGT GGTCGACAAG
GTGGTCGACA AGAAGGGCAC CCGCGCGGTG GCCGAGGAAT ACCTCAAGTA CCTGTATTCG
GACGAAGGCC AGGACATTGC GGGCCGCAAC TTCTATCGCC CGACCTCGGA AAAGGCCAAG
GCCAAGTACG ACAAGCAGTT TCCCAAGCTC ACGCTGGTGA CCATCGACCA GGCCTTCGGC
GGCTGGGCCA AGGCCGACAA GGAGCACTTT GCCGACGGCG CTTCGTTCGA CCAGATCTAC
ACGGCCAAGC AGAAGTAA
|
|---|
| Protein sequence | MSLRRDFIKL SLGAGVAGAM ALTALPSFAQ GAAPVTLLNV SYDPTRELYV DYNRAFAKYW
KGKTGQDVTI KQSHGGSGKQ ARSIIDGIDA DVATLALGGD IDALATHGGL VKADWQKRLP
QNSAPYTSTI VFLVKKGNPK GLKDWDDLVK PGVQVITPNP KTSGGARWNY LAAWEFAKRK
YGSDAKAKEY IGSLFKNVPV LDAGARGATI TFVQRGVGDV LLAWENEAFL ALKEFGAEKF
EIVVPSISIL AEPTVAVVDK VVDKKGTRAV AEEYLKYLYS DEGQDIAGRN FYRPTSEKAK
AKYDKQFPKL TLVTIDQAFG GWAKADKEHF ADGASFDQIY TAKQK
|
|---|
| |