| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2978 |
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| Symbol | |
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| ID | 7972254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3135667 |
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| End bp | 3136626 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793563 |
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| Product | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein |
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| Protein accession | YP_002944864 |
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| Protein GI | 239815954 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTCCA TCTCCATCCC GCGCCGCCGC CTGCTGCAGG GCGCCGCTGC CGCCGCAATC
GCGTTGCCTT CCTTCGCCGC GCTGGCCCAG GCGCCGGCGC GGCAGCTGCG CATCGGCCAC
CAGAAGGGCG CCCTCAGCAT TCTCAAGGGC CGCGGCACGC TCGAGAAGCG GCTGGCGCCG
CTCGGCGTGG CCGTGAAGTG GACCGAGTTC ACCGCCGGCC CCGTGCAGCT CGAGGCGCTG
AACGTCGGCT CCATCGATTT CGGCGACGTA GGCGAGGCGC CGCCGATCTT CGCGCAGGCC
GCCGGCGCGC CGCTGGCCTA CGTGGCCACC ACGCTGCCGC GGCCCCAGTC GGAAGCGGTG
CTGGTGCCCA AGGGCTCGGC CATCAGGACC GTGGCCGAGC TGAAGGGAAA GAAGGTCGCG
CTCAACAAGG GCTCGAACGT CCACTACTTC ATCGCCAAGC TGATCGAGAA GCACGGCCTT
GCCTACAGCG ACCTGAACCT CGTCTTCCTG CCGCCGGCCG ATGCGCGCGC GGCCTTCGAA
AAGGGCTCGG TCGATGCCTG GGTGATCTGG GATCCGTTCC TTGCCGCCGC CGAAAAATCG
CTCGAGGCCC GCGTCCTGGC CGACGCGACC GGCGTGGTGG GCAACCGCGG CTATTACTTC
TCGTCGCTCG GCTATGCGGC CAAGAACGCC GACGTGCTGG CCATTGCGAT CGAGGAGATC
AACAAGGTCG ACGTCTGGGG CACCGCCCAC AAGGACGATC TTGCCGCCGA GTTCGCGGCC
CTGTGGGGCC TGCCGAAGCC GGTGGCCGAA CTGACGGTGG CACGCGCGGC CTACGGGACC
AGTCCCATCA GCAAGGCCGT GCTTGCCGAG CAGCAGAAGA TCGCGGACAC CTTCTTCGAC
CTGAAGCTGA TCCCCCGAAG GATCAGCGTG CTCGAGGCCG CCGCGGCGGG CATCGCGTGA
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| Protein sequence | MTSISIPRRR LLQGAAAAAI ALPSFAALAQ APARQLRIGH QKGALSILKG RGTLEKRLAP
LGVAVKWTEF TAGPVQLEAL NVGSIDFGDV GEAPPIFAQA AGAPLAYVAT TLPRPQSEAV
LVPKGSAIRT VAELKGKKVA LNKGSNVHYF IAKLIEKHGL AYSDLNLVFL PPADARAAFE
KGSVDAWVIW DPFLAAAEKS LEARVLADAT GVVGNRGYYF SSLGYAAKNA DVLAIAIEEI
NKVDVWGTAH KDDLAAEFAA LWGLPKPVAE LTVARAAYGT SPISKAVLAE QQKIADTFFD
LKLIPRRISV LEAAAAGIA
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