| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2974 |
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| Symbol | |
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| ID | 7972250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3132473 |
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| End bp | 3133447 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793559 |
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| Product | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein |
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| Protein accession | YP_002944860 |
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| Protein GI | 239815950 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.622953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAACA TCATTTCGCG GCGCGCGGCC ATCGCCACGC TGGGCGCACT GGGCGCCGGT
GCCGCGTTCG CGCAGGGCGG GGCCACGCGG CCCCTCACCG TGCGGCTCGG CTACCAGAAG
TCCTCGACGC TGATCGCGCT GCTGAAGGTG CAGGGCACGC TCGAAAGGCA GCTTGCCCCG
CTCAACGCCA CGCCGAGCTG GCACGAGTTC ACCAGCGGCC TGCCGCTGCT CGAGGCGCTG
AACCTCGACA ACCTGGACAT CAGTGCCGAC GTGGCCGACA CCGTGCCGGT GTTCGCGCAG
GCCGCCGGCG CCGACCTGAC CTTTGTCGCG CAGGAAGCGC CGTCGCCGGC CGCGCAGGCC
ATCCTCGTGC GCGAGGACTC GCCGCTCCGG TCGGTGGCCG ACCTGAAGGG AAAGAAGGTC
GGCTTCGCCA AGGCGGCCGG CGCGCACTAC CTGCTGATCG CGGCGCTGGA GAAGGCTGGC
CTGTCCTTCA GGGACATCGA TCCCGCCTAC CTGACGCCGG CCGACGGCCG TGCCGCCTTC
GAGCGCGGCG CCATCGACGC CTGGGTCGTG TGGGATCCGT TCCTGGCGGC CGCGCAGCGC
CAGGCCAGGG TGCGCGTGCT GGCCGATGGC ACCGGCATCG CCTCGTACCA GCGCTACTAC
CTCGCCAGCA CCAAGTTCGC GAAGGCGCGT CCCGATGTGC TGCGCGTGGT CTATGCCGAG
CTCGAGAAAA CCGGCCGATG GGTCAAGCAG AACCCGAAGG AGGCCGCGGC GCTGCTGTCG
CCCGTGTGGG GCCTGGACGC GGCAACCATC GAGCGGGCCA ACGCTCGCCG CAGCTACGCG
GTGCGTCCGG TGGTGGCCGA GGCGCTGGCC GAGCAGCAGC GCATCGCCGA TGCCTTCTTC
GCGGAAAAGC TGCTGCCTAG AAAGATCAAC GCGCTCGACG TGGCGCTCTT CCAACCGGGC
CTGAAATCAT CATGA
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| Protein sequence | MKNIISRRAA IATLGALGAG AAFAQGGATR PLTVRLGYQK SSTLIALLKV QGTLERQLAP
LNATPSWHEF TSGLPLLEAL NLDNLDISAD VADTVPVFAQ AAGADLTFVA QEAPSPAAQA
ILVREDSPLR SVADLKGKKV GFAKAAGAHY LLIAALEKAG LSFRDIDPAY LTPADGRAAF
ERGAIDAWVV WDPFLAAAQR QARVRVLADG TGIASYQRYY LASTKFAKAR PDVLRVVYAE
LEKTGRWVKQ NPKEAAALLS PVWGLDAATI ERANARRSYA VRPVVAEALA EQQRIADAFF
AEKLLPRKIN ALDVALFQPG LKSS
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