Gene Vapar_2965 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2965 
Symbol 
ID7972241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3124440 
End bp3125087 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content68% 
IMG OID644793550 
ProductNAD(P)H dehydrogenase (quinone) 
Protein accessionYP_002944851 
Protein GI239815941 
COG category[I] Lipid transport and metabolism 
COG ID[COG1182] Acyl carrier protein phosphodiesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.192202 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCTGC TCCACATCGA CTCCAGCATC CTGAGTGCCA ATTCGACCTC CCGCCTCCTC 
ACGGCAGAGA TCGTGGCGGC CTGGAAAGCC GCGCATCCCG ACACCACGGT CGAGTACCTC
GACCTTGCCG CCAATGCGCC CTCGCACTTC GGCGCCGATG CCCTGGGCAT CAAGACCGGC
GTGCAGGCCC AGCCGACCGA AGCCCAGCAG CGCGAGAACG CGCTCTCGGA ACAGCTCGTG
AGCCAGTTCC TGGCTTCCGA CGTCATCGTG GTGGGCGCGC CGCTGTACAA CTTCTCGGTG
CCGACCCAGC TCAAGGCCTG GATCGACCGG CTCGCGCAAA TCGGCCGCAC CTTCAAGTAC
ACCGACAAGG GCCCCGTGGG CCTGGCCGGC GGCAAGACCG TGATCGTGGC GTCCAGCCGC
GGCGGCATCT ACTCGACCAC CGAAGGCGGC CAGGCCGCGG AACACCAGGA GAGCTACCTG
AAGGTGGTGT TCGGCTTCTT CGGCATCACC GACGTGCGCT TCGTGCGTGC CGAAGGCGTG
GCCATGGGCG ATGCCACCAA GGCCGCCGCA CTGGCCGCGG CACGCGCCGA CATCCTTGCG
GCCACGGCCG AAGCCGCCAA CCAGCAGGAC GTGGCACAGG CCGCCTGA
 
Protein sequence
MKLLHIDSSI LSANSTSRLL TAEIVAAWKA AHPDTTVEYL DLAANAPSHF GADALGIKTG 
VQAQPTEAQQ RENALSEQLV SQFLASDVIV VGAPLYNFSV PTQLKAWIDR LAQIGRTFKY
TDKGPVGLAG GKTVIVASSR GGIYSTTEGG QAAEHQESYL KVVFGFFGIT DVRFVRAEGV
AMGDATKAAA LAAARADILA ATAEAANQQD VAQAA