| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2961 |
|---|
| Symbol | |
|---|
| ID | 7972237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3121032 |
|---|
| End bp | 3122048 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644793546 |
|---|
| Product | sulfate ABC transporter, periplasmic sulfate-binding protein |
|---|
| Protein accession | YP_002944847 |
|---|
| Protein GI | 239815937 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1613] ABC-type sulfate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00971] sulfate/thiosulfate-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCCA GATTCAAGAC CTTTGCCGCC GTGCTCGCGC TGGCGTCTTC CGCGCTCGCG
GGCGGCAGCG CCTTTGCCCA GGGCAACACG CTGCTGAACG CCTCGTACGA CGTGGCGCGC
GAGTTCTACA AGGACTACAA CGCGGCGTTC GTGGCCAACT ACAAGAAGAC CACCGGCAAG
GACGTGAAGA TCGACCAGTC GCATGGCGGC TCCAGCGCCC AGGCGCGCGC GGTGGCCGAC
GGCCTCGATG CCGACGTGGT GACCATGAAC ACCACCACCG ACATCGACTT CCTGGCCAAC
ACCGGCGTGG TCGCGAAGGA CTGGAACAAG AAATTCCCCG AGAACGCATC GCCCACCACC
TCGACCATGC TGTTCCTGGT GCGCAACGGC AACCCCAAGG GCATCAAGGA CTGGGAAGAC
CTGGTCAAGC CCGGCGTACA GGTCGTGATC GTCAACCCCA AGACCGGCGG CAACGGGCGC
TACGCCTATC TCGCGGCCTG GGGCTACGTC AAGAAGAAGG GCGGCACCGA CGCCCAGGCG
GCCGAGTTCG TCGGCAAGCT GTTCAAGAAC GTGCCGGTGC TGGCGCGCGG CGGCCGCGAC
GCCACCACCG CCTTCCTGCA GCGCAACATC GGCGATGCGC TGATCACCTT CGAATCCGAA
GTGGTGTCGA TCGAGCGCGA ATTCGGCTCG GGCAAGGTCG ATTCGGTCTA CCCGTCGATC
AGCATCGTGG CCGAGAACCC GGTGGCCGTG GTCGAGCGCA CCACCAAGAA GAAGGGCACT
GGCGAACTCG CCAAGGCCTA CCTCGACTGG CTCTACTCCG AAGAGGCGCA GGAAATCGCC
GCCAAGCACG CGCTGCGTCC GCGCTCGCAG GCCGTGCTCA AGAAGTACGC CGCCACCTTC
AAGCCGCTGC AGCTGTTCAC GGTGCAGGAA CTGTTCGGCA GCCTCGGCGA AGCGCAGAAG
GTGCACTTCA ACGACGGCGG CCAGTTCGAC AAGCTCTACA CGCCCGGCGC AAAGTAA
|
|---|
| Protein sequence | MTSRFKTFAA VLALASSALA GGSAFAQGNT LLNASYDVAR EFYKDYNAAF VANYKKTTGK
DVKIDQSHGG SSAQARAVAD GLDADVVTMN TTTDIDFLAN TGVVAKDWNK KFPENASPTT
STMLFLVRNG NPKGIKDWED LVKPGVQVVI VNPKTGGNGR YAYLAAWGYV KKKGGTDAQA
AEFVGKLFKN VPVLARGGRD ATTAFLQRNI GDALITFESE VVSIEREFGS GKVDSVYPSI
SIVAENPVAV VERTTKKKGT GELAKAYLDW LYSEEAQEIA AKHALRPRSQ AVLKKYAATF
KPLQLFTVQE LFGSLGEAQK VHFNDGGQFD KLYTPGAK
|
|---|
| |