Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2952 |
Symbol | |
ID | 7972228 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3110727 |
End bp | 3114242 |
Gene Length | 3516 bp |
Protein Length | 1171 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793537 |
Product | chromosome segregation protein SMC |
Protein accession | YP_002944838 |
Protein GI | 239815928 |
COG category | [D] Cell cycle control, cell division, chromosome partitioning |
COG ID | [COG1196] Chromosome segregation ATPases |
TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0128917 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGTCTCA ATTCCATCAA GCTTTCGGGC TTCAAGTCGT TCGCCGAACC CACCAACTTC CTGCTGCCGG GCCAACTGGT CGGCGTCGTC GGGCCCAACG GTTGCGGCAA GTCGAACATC ATGGATGCGG TGCGCTGGGT GCTGGGCGAG TCGCGCGCGT CGGAGCTGCG CGGCGAGTCG ATGCAGGACG TGATCTTCAA CGGCACGACC ACGCGCAAGC AGGCCAGCCG TTCGAGCGTG GAACTGGTGT TCGACAACGC CGACCACCGC GCGGGCGGCC AGTGGAACCA GTTCGGCGAA ATTGCCGTGC GGCGCGTGCT CACGCGCGAC GGCACCAGCA GCTACTACAT CAACAACCAG CCGGTGCGCC GCCGCGACGT GCAGGACGTG TTCCTGGGCA CCGGCCTCGG ACCGCGCGCC TACGCGATCA TCGGCCAGGG CACGATCAGC CGGATCATCG AGTCCAAGCC CGAGGAGCTG CGCCTGTTCC TCGAAGAGGC GGCGGGCGTC TCCAAGTACA AGGAGCGCCG GCGCGAAACC GAAAACCGCC TGGGCGACAC GCGCGAGAAC CTCACGCGCG TGGAAGACAT CCTGCGCGAA CTCAACGCCA ACCTCGAAAA GCTCGAGAAG CAGGCCGAGG TGGCTGCGCG CTACAACGCG CTGCAGGGCG AAGCCACCAA AAAGCAGCAC CAGCTGTGGT TCCTCAAGCG CAGCGAAAGC GATGCCGACC AGGCCAAGAT CAAGGCCGAC TCGGAAAAGG CGATCAACGA CCTCGAGTCG CGCACCGCCG ACCTGCGCCG CATCGAATCC GAACTCGAAA CCGTGCGCCA GGCCCACTAC GCGGCCGGCG ACCAGGTCAA CCAGGCCCAG GGCAAGCTCT ACGAAGCCAG CGCCGAAGTG GGCCGCCTCG AAGGCGAGAT CCGCTTCGTG GTCGAAGGCC GCCAGCGCGT GGAGCAGCGG CTGGTCCAGC TGCGCGAGCA GATGGGCCAA TGGGGCCGCC GCCGCGAAGA GGCCGAGGCG GAGATCGAAA CCCTGGCCGG CCAGGGCGTC GACGCGGAAG AGCAGGCCGT GCTGCTGGCC GCGCAGCTCG AGGAACACGA CGCGCGCATG CCCGAGCTCG AGGAAGCCGT GCAGCGCGCC CAGGACGAGG CCAACGCCCA GCGCAGCACC GTCTCGCAGG TGCAGCAGCA GATCCAGGTG CTGGCGGCCG ACCAGCGCAA CATCGAAGAG CAGAGCCGGC AGCTCACGCA GCGCAGCGAA CGCCTGCGCG CCGACCAGAA CGCACTGGCC GCGCCCGACG AGGCGCGCCT GCAAGCCCTG CAGGAAGAGC ATGCGGCCGC GCAGGAAACC GCGAGCGAGG CCGACGCGCG CCTGCACGAG CTGCAGGAAT CGGTGCCGCA GCTCGACGAC GACCGCCGCG CCAAGCAGCA GGCCGTCAAC ACCGAAGGCG CGCGCCATGC CGAGCTCTCG GCGCGGCTCG AGGCGCTGCG TGCGCTGCAG GAAAAGGTCA AGACCGATGG CAAGCTGGCG CCCTGGCTCG CCAAGCACGG GCTCGAAGGC ATGCAGGGGC TGTGGAGCCG CATCCACATC GAGCAGGGCT GGGAAAACGC GCTCGAAGCG GCGCTGCGCG AACGCCTGGG CGCGCTCGAG GTCAGCCGGC TCGACATGGT GCGCGCCTTC GGCAACGATG CGCCGCCCGC CAAGCTCGCG TTCTACAGCC CGCCCGCGGC CGGCGCGCCG CAAGGTACGG CCGCGCTACC GCGCCTGTCG AGCCTGCTGC GCCTGAACGA TGCGGGCCTG CAGGCCCTGC TGACCGACTG GCTGCACGGC TGCTACACCG CGCAGAGTTT CGAAGAAGCG CTCGCGCAGC GCGCCACGCT GCAGCCGGGC GAAGTCATCT ACGTGCAGAG CGGCCACGCC GTCTTCTCGC ACAGCGTCAA TTTCTACGCC CCCGATTCCG AGCAGGCTGG CCTGCTGGCG CGCCAGCAGG AAATGGAAAA CCTCGAGCGC CAGCTGCGTG CCCAGGCCCT CATCAGCGAA GAGGCGCGCA CCGCGCTGGT CCGCGCCGAA GCCGCCTACG CCGATGCGGC GCAGCGCCTC GTCACGGCGC GCCGCGAAGC GGCCGAAACG CAATCGCGTG CGCATGAACT GCAGGTCGAG ACGCTGCGCA TGACGCAGCT CGCCGAGCAG ACGCGCGCGC GCAGCGAGCA GCTGGCTGCC GACCTGGCCG AGGTCGACGC GCAGCTGGAA GAACTGCAGG AAAAGCGCAT GGCGGCCGAA GGCCGCTTCG AAGAGCTCGA CATGCAGCTG GCCGACAGCC AGGAGCGCCA CGCGCAGCTC GACGAACGCG TGATCGAGGC CGGCCGCGTG CTGGCCGCGA GCCGCGAGCA GCACCGCAGC CTCGAGCGGC AGGCGCAGGA GGCCACCTTC TCGCAGCGCA CGCTCGAAGC CCGCCGCGGC GAGCTGAACC GCGCGATCGA AACCGCATCG CAGCAGGTGC TGTCGCTCAC CGACGAAGAC GAGCGCGCCC GCGCCGAACT CGGCCGGCTG TCCGATGCGG CGGCCCAGGC CGGCCTGCAG GACGCGCTGG CGCTCAAGCT CGAGCGCGAG GCCGCGCTGG GTGCGGCGCG CAGCCAGTAC GACGACCTCA CGCTGAAGCT GCGCGCCAGC GACGAACGCC GGCTGCAGCT GGAGCGCGAA CTCGATCCGC TGCGCCAGCG CATCACCGAA TTCCAGCTCA AGGAACAGGC CGCGCGCCTG GGCGTCGAGC AATACCAGCA GCTGCTGGAC GACGCCGGCG CCGACCTCGA GGCCGTTGCC CAGTCGATCG AAGCCGACAA GGTCCGCCTC ACCGGCCTGC AAGGCGAGAT CGACCGCCTG AACCGCGAAG TGGTGGCGCT GGGCGCGGTC AACCTGGCGG CGCTCGACGA GCTCGCCGTG GCCAGCGAGC GCAAGACCTT CCTCGATGCG CAGTCCGCCG ACCTGAACGA GGCCATCGGC ACGCTGGAAG ACGCCATCCG CAAGATCGAC GCCGAGACGC GCGACCTGCT GGGCGGCACC TTCAAGATCG TCAACGAGCA CTTCAGCCGC ATGTTCCCCG AGCTGTTCGG CGGCGGCAAT GCACGGCTCG TGATGACCGG CGACGAGATC CTCGACGCCG GCGTGCAGGT GCTGGCGCAG CCGCCCGGCA AGAAAAACCA GACCATCCAC CTGCTCTCGG GCGGCGAGAA GGCGCTCACG GCCATTGCGC TGGTGTTCGC GATCTTCCAG CTCAACCCGG CGCCTTTCTG CCTGCTCGAC GAAGTGGACG CGCCGCTGGA CGATGCGAAC ACCGAACGCT ATGCCAAACT CGTGACCGCC ATGAGCCGCG AAACCCAGTT CCTCTTCATC AGCCACAACA AGATCGCCAT GGAAATGGCC GAGCAGCTGA TCGGCGTCAC CATGCAGGAG CAGGGCGTCT CGCGCATCGT CGCGGTCGAC ATGGAAGCGG CCGCCTCCAT GGTCGAGGCT GCTTGA
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Protein sequence | MRLNSIKLSG FKSFAEPTNF LLPGQLVGVV GPNGCGKSNI MDAVRWVLGE SRASELRGES MQDVIFNGTT TRKQASRSSV ELVFDNADHR AGGQWNQFGE IAVRRVLTRD GTSSYYINNQ PVRRRDVQDV FLGTGLGPRA YAIIGQGTIS RIIESKPEEL RLFLEEAAGV SKYKERRRET ENRLGDTREN LTRVEDILRE LNANLEKLEK QAEVAARYNA LQGEATKKQH QLWFLKRSES DADQAKIKAD SEKAINDLES RTADLRRIES ELETVRQAHY AAGDQVNQAQ GKLYEASAEV GRLEGEIRFV VEGRQRVEQR LVQLREQMGQ WGRRREEAEA EIETLAGQGV DAEEQAVLLA AQLEEHDARM PELEEAVQRA QDEANAQRST VSQVQQQIQV LAADQRNIEE QSRQLTQRSE RLRADQNALA APDEARLQAL QEEHAAAQET ASEADARLHE LQESVPQLDD DRRAKQQAVN TEGARHAELS ARLEALRALQ EKVKTDGKLA PWLAKHGLEG MQGLWSRIHI EQGWENALEA ALRERLGALE VSRLDMVRAF GNDAPPAKLA FYSPPAAGAP QGTAALPRLS SLLRLNDAGL QALLTDWLHG CYTAQSFEEA LAQRATLQPG EVIYVQSGHA VFSHSVNFYA PDSEQAGLLA RQQEMENLER QLRAQALISE EARTALVRAE AAYADAAQRL VTARREAAET QSRAHELQVE TLRMTQLAEQ TRARSEQLAA DLAEVDAQLE ELQEKRMAAE GRFEELDMQL ADSQERHAQL DERVIEAGRV LAASREQHRS LERQAQEATF SQRTLEARRG ELNRAIETAS QQVLSLTDED ERARAELGRL SDAAAQAGLQ DALALKLERE AALGAARSQY DDLTLKLRAS DERRLQLERE LDPLRQRITE FQLKEQAARL GVEQYQQLLD DAGADLEAVA QSIEADKVRL TGLQGEIDRL NREVVALGAV NLAALDELAV ASERKTFLDA QSADLNEAIG TLEDAIRKID AETRDLLGGT FKIVNEHFSR MFPELFGGGN ARLVMTGDEI LDAGVQVLAQ PPGKKNQTIH LLSGGEKALT AIALVFAIFQ LNPAPFCLLD EVDAPLDDAN TERYAKLVTA MSRETQFLFI SHNKIAMEMA EQLIGVTMQE QGVSRIVAVD MEAAASMVEA A
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