Gene Vapar_2952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2952 
Symbol 
ID7972228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3110727 
End bp3114242 
Gene Length3516 bp 
Protein Length1171 aa 
Translation table11 
GC content69% 
IMG OID644793537 
Productchromosome segregation protein SMC 
Protein accessionYP_002944838 
Protein GI239815928 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG1196] Chromosome segregation ATPases 
TIGRFAM ID[TIGR02168] chromosome segregation protein SMC, common bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0128917 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGTCTCA ATTCCATCAA GCTTTCGGGC TTCAAGTCGT TCGCCGAACC CACCAACTTC 
CTGCTGCCGG GCCAACTGGT CGGCGTCGTC GGGCCCAACG GTTGCGGCAA GTCGAACATC
ATGGATGCGG TGCGCTGGGT GCTGGGCGAG TCGCGCGCGT CGGAGCTGCG CGGCGAGTCG
ATGCAGGACG TGATCTTCAA CGGCACGACC ACGCGCAAGC AGGCCAGCCG TTCGAGCGTG
GAACTGGTGT TCGACAACGC CGACCACCGC GCGGGCGGCC AGTGGAACCA GTTCGGCGAA
ATTGCCGTGC GGCGCGTGCT CACGCGCGAC GGCACCAGCA GCTACTACAT CAACAACCAG
CCGGTGCGCC GCCGCGACGT GCAGGACGTG TTCCTGGGCA CCGGCCTCGG ACCGCGCGCC
TACGCGATCA TCGGCCAGGG CACGATCAGC CGGATCATCG AGTCCAAGCC CGAGGAGCTG
CGCCTGTTCC TCGAAGAGGC GGCGGGCGTC TCCAAGTACA AGGAGCGCCG GCGCGAAACC
GAAAACCGCC TGGGCGACAC GCGCGAGAAC CTCACGCGCG TGGAAGACAT CCTGCGCGAA
CTCAACGCCA ACCTCGAAAA GCTCGAGAAG CAGGCCGAGG TGGCTGCGCG CTACAACGCG
CTGCAGGGCG AAGCCACCAA AAAGCAGCAC CAGCTGTGGT TCCTCAAGCG CAGCGAAAGC
GATGCCGACC AGGCCAAGAT CAAGGCCGAC TCGGAAAAGG CGATCAACGA CCTCGAGTCG
CGCACCGCCG ACCTGCGCCG CATCGAATCC GAACTCGAAA CCGTGCGCCA GGCCCACTAC
GCGGCCGGCG ACCAGGTCAA CCAGGCCCAG GGCAAGCTCT ACGAAGCCAG CGCCGAAGTG
GGCCGCCTCG AAGGCGAGAT CCGCTTCGTG GTCGAAGGCC GCCAGCGCGT GGAGCAGCGG
CTGGTCCAGC TGCGCGAGCA GATGGGCCAA TGGGGCCGCC GCCGCGAAGA GGCCGAGGCG
GAGATCGAAA CCCTGGCCGG CCAGGGCGTC GACGCGGAAG AGCAGGCCGT GCTGCTGGCC
GCGCAGCTCG AGGAACACGA CGCGCGCATG CCCGAGCTCG AGGAAGCCGT GCAGCGCGCC
CAGGACGAGG CCAACGCCCA GCGCAGCACC GTCTCGCAGG TGCAGCAGCA GATCCAGGTG
CTGGCGGCCG ACCAGCGCAA CATCGAAGAG CAGAGCCGGC AGCTCACGCA GCGCAGCGAA
CGCCTGCGCG CCGACCAGAA CGCACTGGCC GCGCCCGACG AGGCGCGCCT GCAAGCCCTG
CAGGAAGAGC ATGCGGCCGC GCAGGAAACC GCGAGCGAGG CCGACGCGCG CCTGCACGAG
CTGCAGGAAT CGGTGCCGCA GCTCGACGAC GACCGCCGCG CCAAGCAGCA GGCCGTCAAC
ACCGAAGGCG CGCGCCATGC CGAGCTCTCG GCGCGGCTCG AGGCGCTGCG TGCGCTGCAG
GAAAAGGTCA AGACCGATGG CAAGCTGGCG CCCTGGCTCG CCAAGCACGG GCTCGAAGGC
ATGCAGGGGC TGTGGAGCCG CATCCACATC GAGCAGGGCT GGGAAAACGC GCTCGAAGCG
GCGCTGCGCG AACGCCTGGG CGCGCTCGAG GTCAGCCGGC TCGACATGGT GCGCGCCTTC
GGCAACGATG CGCCGCCCGC CAAGCTCGCG TTCTACAGCC CGCCCGCGGC CGGCGCGCCG
CAAGGTACGG CCGCGCTACC GCGCCTGTCG AGCCTGCTGC GCCTGAACGA TGCGGGCCTG
CAGGCCCTGC TGACCGACTG GCTGCACGGC TGCTACACCG CGCAGAGTTT CGAAGAAGCG
CTCGCGCAGC GCGCCACGCT GCAGCCGGGC GAAGTCATCT ACGTGCAGAG CGGCCACGCC
GTCTTCTCGC ACAGCGTCAA TTTCTACGCC CCCGATTCCG AGCAGGCTGG CCTGCTGGCG
CGCCAGCAGG AAATGGAAAA CCTCGAGCGC CAGCTGCGTG CCCAGGCCCT CATCAGCGAA
GAGGCGCGCA CCGCGCTGGT CCGCGCCGAA GCCGCCTACG CCGATGCGGC GCAGCGCCTC
GTCACGGCGC GCCGCGAAGC GGCCGAAACG CAATCGCGTG CGCATGAACT GCAGGTCGAG
ACGCTGCGCA TGACGCAGCT CGCCGAGCAG ACGCGCGCGC GCAGCGAGCA GCTGGCTGCC
GACCTGGCCG AGGTCGACGC GCAGCTGGAA GAACTGCAGG AAAAGCGCAT GGCGGCCGAA
GGCCGCTTCG AAGAGCTCGA CATGCAGCTG GCCGACAGCC AGGAGCGCCA CGCGCAGCTC
GACGAACGCG TGATCGAGGC CGGCCGCGTG CTGGCCGCGA GCCGCGAGCA GCACCGCAGC
CTCGAGCGGC AGGCGCAGGA GGCCACCTTC TCGCAGCGCA CGCTCGAAGC CCGCCGCGGC
GAGCTGAACC GCGCGATCGA AACCGCATCG CAGCAGGTGC TGTCGCTCAC CGACGAAGAC
GAGCGCGCCC GCGCCGAACT CGGCCGGCTG TCCGATGCGG CGGCCCAGGC CGGCCTGCAG
GACGCGCTGG CGCTCAAGCT CGAGCGCGAG GCCGCGCTGG GTGCGGCGCG CAGCCAGTAC
GACGACCTCA CGCTGAAGCT GCGCGCCAGC GACGAACGCC GGCTGCAGCT GGAGCGCGAA
CTCGATCCGC TGCGCCAGCG CATCACCGAA TTCCAGCTCA AGGAACAGGC CGCGCGCCTG
GGCGTCGAGC AATACCAGCA GCTGCTGGAC GACGCCGGCG CCGACCTCGA GGCCGTTGCC
CAGTCGATCG AAGCCGACAA GGTCCGCCTC ACCGGCCTGC AAGGCGAGAT CGACCGCCTG
AACCGCGAAG TGGTGGCGCT GGGCGCGGTC AACCTGGCGG CGCTCGACGA GCTCGCCGTG
GCCAGCGAGC GCAAGACCTT CCTCGATGCG CAGTCCGCCG ACCTGAACGA GGCCATCGGC
ACGCTGGAAG ACGCCATCCG CAAGATCGAC GCCGAGACGC GCGACCTGCT GGGCGGCACC
TTCAAGATCG TCAACGAGCA CTTCAGCCGC ATGTTCCCCG AGCTGTTCGG CGGCGGCAAT
GCACGGCTCG TGATGACCGG CGACGAGATC CTCGACGCCG GCGTGCAGGT GCTGGCGCAG
CCGCCCGGCA AGAAAAACCA GACCATCCAC CTGCTCTCGG GCGGCGAGAA GGCGCTCACG
GCCATTGCGC TGGTGTTCGC GATCTTCCAG CTCAACCCGG CGCCTTTCTG CCTGCTCGAC
GAAGTGGACG CGCCGCTGGA CGATGCGAAC ACCGAACGCT ATGCCAAACT CGTGACCGCC
ATGAGCCGCG AAACCCAGTT CCTCTTCATC AGCCACAACA AGATCGCCAT GGAAATGGCC
GAGCAGCTGA TCGGCGTCAC CATGCAGGAG CAGGGCGTCT CGCGCATCGT CGCGGTCGAC
ATGGAAGCGG CCGCCTCCAT GGTCGAGGCT GCTTGA
 
Protein sequence
MRLNSIKLSG FKSFAEPTNF LLPGQLVGVV GPNGCGKSNI MDAVRWVLGE SRASELRGES 
MQDVIFNGTT TRKQASRSSV ELVFDNADHR AGGQWNQFGE IAVRRVLTRD GTSSYYINNQ
PVRRRDVQDV FLGTGLGPRA YAIIGQGTIS RIIESKPEEL RLFLEEAAGV SKYKERRRET
ENRLGDTREN LTRVEDILRE LNANLEKLEK QAEVAARYNA LQGEATKKQH QLWFLKRSES
DADQAKIKAD SEKAINDLES RTADLRRIES ELETVRQAHY AAGDQVNQAQ GKLYEASAEV
GRLEGEIRFV VEGRQRVEQR LVQLREQMGQ WGRRREEAEA EIETLAGQGV DAEEQAVLLA
AQLEEHDARM PELEEAVQRA QDEANAQRST VSQVQQQIQV LAADQRNIEE QSRQLTQRSE
RLRADQNALA APDEARLQAL QEEHAAAQET ASEADARLHE LQESVPQLDD DRRAKQQAVN
TEGARHAELS ARLEALRALQ EKVKTDGKLA PWLAKHGLEG MQGLWSRIHI EQGWENALEA
ALRERLGALE VSRLDMVRAF GNDAPPAKLA FYSPPAAGAP QGTAALPRLS SLLRLNDAGL
QALLTDWLHG CYTAQSFEEA LAQRATLQPG EVIYVQSGHA VFSHSVNFYA PDSEQAGLLA
RQQEMENLER QLRAQALISE EARTALVRAE AAYADAAQRL VTARREAAET QSRAHELQVE
TLRMTQLAEQ TRARSEQLAA DLAEVDAQLE ELQEKRMAAE GRFEELDMQL ADSQERHAQL
DERVIEAGRV LAASREQHRS LERQAQEATF SQRTLEARRG ELNRAIETAS QQVLSLTDED
ERARAELGRL SDAAAQAGLQ DALALKLERE AALGAARSQY DDLTLKLRAS DERRLQLERE
LDPLRQRITE FQLKEQAARL GVEQYQQLLD DAGADLEAVA QSIEADKVRL TGLQGEIDRL
NREVVALGAV NLAALDELAV ASERKTFLDA QSADLNEAIG TLEDAIRKID AETRDLLGGT
FKIVNEHFSR MFPELFGGGN ARLVMTGDEI LDAGVQVLAQ PPGKKNQTIH LLSGGEKALT
AIALVFAIFQ LNPAPFCLLD EVDAPLDDAN TERYAKLVTA MSRETQFLFI SHNKIAMEMA
EQLIGVTMQE QGVSRIVAVD MEAAASMVEA A