| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2950 |
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| Symbol | |
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| ID | 7972226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3107504 |
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| End bp | 3109588 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793535 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_002944836 |
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| Protein GI | 239815926 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.191754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACGC GCGACGAAGC GGCACGCGAA GCCGCCGCAC TGAGCGAACA GCTCCACAAG
CACGCCCATC TCTACTACGT GCTCGATGCG CCCGAGCTGC CCGACGCCGA GTACGACCGG
CTGTTCCAGC GGCTGCAGGC GCTGGAAGCC GAATACCCCG AACTGCGCAC GCCCGATTCG
CCCACGCAGC GCGTCGGCGG CAAGGTGCTC GAAGGCTTCG TGAAGGTGCG CCACAAGGTG
CCGATGCTGT CGATCCGCAC CGAGACCGAC ATCTCGCCCG GCGGCGCCAG CGCCTTCGAT
GCCCGCGTGC GCAAGGAACT GGGCCTGGCC GAGGACGGGC CGCAGGTCGA GTACGTCTGC
GAACTCAAGT TCGACGGCCT GGCCATGAAC CTGCGCTATG AGAACGGCGT GCTGGTGCAG
GCCGCGACGC GCGGCGATGG CGAGGTCGGC GAGGAGGTCA CGCAGAACAT CCGCACGGTG
CGCGAGATTC CGCTGCGGCT CAATGGCAAG GCGCCGCCCG TGGTCGAGGT GCGCGGCGAG
ATCTACATGA AGCGCGCCGA CTTCGAGGCG CTCAACGAGC GCCAGCGCGA GAAGATCGCG
GCCGGGCAGA AGAACGAGAA GGTCTTCGTC AATCCGCGCA ATGCCGCGGC CGGCGCGGTG
CGCCAGCTCG ATCCGGCCAT TGCGGCGGCG CGGCCGCTGA GCTTTTTTGC CTACGGCCTC
GGCGAGGTCA CGCCGGCCAG CGAAGGCGGG CCGGAATTTC CGACCCAGTT CGACTGGCTG
CAGCAGTTCC ACGCCTGGGG CTTTCCGGTG GCCACGCAGA CCGCACGCGC GACCGGTGCC
ATCGAACTGA TCGCCTTCCA CGAGAACATC GGGCGCCAGC GCGATGCCTT GCCCTACGAC
ATCGACGGCG TGGTCTACAA GGTCGACAGC ATCGAGCTGC AGCGGCGGCT GGGCTTCGTC
TCGCGCGAAC CGCGCTGGGC CGTGGCACAC AAGTACCCGG CGCAGGAGCA GATCACCGAG
GTGCTGGGCA TCGAGGTGCA GGTCGGGCGT ACCGGCAAGC TCACGCCGGT GGCCAAGCTC
GCGCCGGTCT TCGTGGGCGG CGTGACCGTC ACCAACGCCA CGCTGCACAA CGAGGACGAG
GCGCGCCGCA AGGACGTGCG CGTGGGCGAC AAGGTGATCG TGCGGCGGGC CGGCGACGTG
ATCCCCGAAG TGGTCGGCGT GGTGCCCGAA AGCCTCGCCA GGCCCGAGGG CGAGCGAGGC
CTGCTCTTCA CCATGCCGCA CCAGTGCCCG GTGTGCGGAT CGGAAGCGCT GCGCGAAGAG
GGCGAAGTCG ACTACCGCTG CACCGGCGGC CTGTTCTGCG CGGCCCAGCG CAAGGAAGCC
ATCCTGCACT TTGCGGCGCG CCGCGCGGTC GACATCGACG GGCTCGGCGA CAAGCTGGTC
GAGCAGCTGG TCGATGCCAA CCTGATCCGC ACCTTGCCCG ACCTCTACAA GCTCGGATTC
GCCACGCTGG CGGGGCTGGA CCGCATGGCC GACAAGTCGG CCAAGAACCT CGTCGATGCG
CTCGAGGCGT CGAAGAAGAC CACGCTGCCG CGCTTCCTGT TCGGCCTGGG CATACGGCAC
GTGGGCGAGA GCACGGCCAA GGACCTGTCC AAGCACTTCG GCAAGCTCGA CGCGATCATG
GATGCGAGCG AGGAGCAGTT GCTGGAAGTC AACGACGTGG GCCCGGTCGT CGCGCAAAGC
CTGCGCACCT TCTTCGACCA GCCGCACAAC CGCGAGGTGG TCGAGCAGCT GCGCGCCTGC
GGGCTGACCT GGGAGGAGGG CGAACCCGCC GCCCGGGCGC CCAAGCCGCT GGCGGGGCTG
ACCTTCGTGA TTACCGGCAC CCTTCCTACG CTGAGCCGCG ACGAAGCCAA GGACAAACTG
GAAGCAGCCG GCGCCAAGGT GGCGGGTTCC GTCAGCAAGA AGACCAGCTA CCTGGTGGCC
GGCGAAGAGG CCGGCAGCAA GCTGGACAAG GCGCGCGAGA TCGGCGTGGA GGTGATCGAC
GAGGCGCGTA TGCTGGAGCT GCTCGCCGGC GGTGCGCCGG GTTGA
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| Protein sequence | MTTRDEAARE AAALSEQLHK HAHLYYVLDA PELPDAEYDR LFQRLQALEA EYPELRTPDS
PTQRVGGKVL EGFVKVRHKV PMLSIRTETD ISPGGASAFD ARVRKELGLA EDGPQVEYVC
ELKFDGLAMN LRYENGVLVQ AATRGDGEVG EEVTQNIRTV REIPLRLNGK APPVVEVRGE
IYMKRADFEA LNERQREKIA AGQKNEKVFV NPRNAAAGAV RQLDPAIAAA RPLSFFAYGL
GEVTPASEGG PEFPTQFDWL QQFHAWGFPV ATQTARATGA IELIAFHENI GRQRDALPYD
IDGVVYKVDS IELQRRLGFV SREPRWAVAH KYPAQEQITE VLGIEVQVGR TGKLTPVAKL
APVFVGGVTV TNATLHNEDE ARRKDVRVGD KVIVRRAGDV IPEVVGVVPE SLARPEGERG
LLFTMPHQCP VCGSEALREE GEVDYRCTGG LFCAAQRKEA ILHFAARRAV DIDGLGDKLV
EQLVDANLIR TLPDLYKLGF ATLAGLDRMA DKSAKNLVDA LEASKKTTLP RFLFGLGIRH
VGESTAKDLS KHFGKLDAIM DASEEQLLEV NDVGPVVAQS LRTFFDQPHN REVVEQLRAC
GLTWEEGEPA ARAPKPLAGL TFVITGTLPT LSRDEAKDKL EAAGAKVAGS VSKKTSYLVA
GEEAGSKLDK AREIGVEVID EARMLELLAG GAPG
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