| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2945 |
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| Symbol | |
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| ID | 7972221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3103738 |
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| End bp | 3104736 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793530 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002944831 |
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| Protein GI | 239815921 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.223969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGCG GAGCCTCGCG CCGCGGCGCC TGGCTGGGCT GGGTCGTCCA GGCGCTGCTG
GTGCTGGCCG TGGTGGCCGG CGCGGCCTGG GTCGTGAACC ATGCGCTCGA GGTCTTGCGG
GCGCGCGGCG TCCGATCGGG CTTCGACTTT CTTGCCGAGC CTGCGGGCTT CTCCATCAGC
GAAGGCTGGC TCGGCTTCGA GGCCAGCCAG CCGTTCTGGC GCGCCTTCCT TGCGGGCCTG
GTCAACACGG TGCGCGCCTC GGTGCCCGCC GCCATTTTTT CGGTGGTGCT CGGCACGCTG
ATCGGCATCG GCCGGCTCGC GCCGCACGTG CTGCTGCGCG GCATCTGCAC CGCCTACGTC
GAGCTGCTGC GCAACGTGCC ACTGCTCGTG CAGCTGCTGA TGCTGGCCTT TGCGATTGCC
AACCTGCTGC CCGATCCCAC CGAGCCTGTG CGGCTGCTGC CGGGCGTGTG GCTCAGCAAG
GGCGGCCTGA GCGTGCCCTG GCCGGCGTCG GGCGAGGGTG GCTGGTGGCC CACGCATTTC
GATTGGCCCG AGCGCGGCGA CTTCGGCGTG AGCGGTGGCG CGGCGCTGAG TCCGGAGTAC
GTGACCATCG TCGCGGGCCT GTCTTTTTAC TCGGCCGCGT TCGTGGCCGA GATCGTGCGC
GCCGGCATCC TCTCGGTGCC GCAGGGGCAG GTGCTTGCGG GCCAAGCGCT GGGACTCGCG
CCGGTACAGC AGCTGCGCAT CGTGATCCTG CCGCAGGCGC TGCGGGTGAT CGTGCCCTCG
CTCACCAACC AGCTGCTGAG CCTCGTCAAG AATTCATCGC TCGCGGTGGC CGTCGGCTAT
CCGGAGCTGG TGTCGGTGGC CAACACCACC ATCGGCTCGA ACGGCCGTGC CTTCGAGTGC
ATCGCCATCA TCATGGCGGT CTACCTGCTG TTGTCGCTGC TGATCTCCTT CGGCATGAAC
CGCTACAACG CGCGCGTCGC GCTCAGGGGC TGGCGATGA
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| Protein sequence | MSSGASRRGA WLGWVVQALL VLAVVAGAAW VVNHALEVLR ARGVRSGFDF LAEPAGFSIS
EGWLGFEASQ PFWRAFLAGL VNTVRASVPA AIFSVVLGTL IGIGRLAPHV LLRGICTAYV
ELLRNVPLLV QLLMLAFAIA NLLPDPTEPV RLLPGVWLSK GGLSVPWPAS GEGGWWPTHF
DWPERGDFGV SGGAALSPEY VTIVAGLSFY SAAFVAEIVR AGILSVPQGQ VLAGQALGLA
PVQQLRIVIL PQALRVIVPS LTNQLLSLVK NSSLAVAVGY PELVSVANTT IGSNGRAFEC
IAIIMAVYLL LSLLISFGMN RYNARVALRG WR
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