| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2939 |
|---|
| Symbol | |
|---|
| ID | 7972215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3092376 |
|---|
| End bp | 3093161 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644793524 |
|---|
| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
|---|
| Protein accession | YP_002944825 |
|---|
| Protein GI | 239815915 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.483715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC AACTCTTGCA GGCCGTTGCG GCCGCAGCGC TGCTCGGTGC GATTCCTCTG
GCGGCCGTGG CGCAGAACGC AGCCATCGTC AACGGCAAGC CCGTGCCCAA GGCGCGCATG
GACGTGCTGG CCCAGCAGCT GGCCGCGGCC GGCCGCCCGG TCACGCCGGA AATGCAGGGC
CAGCTGCGCG AGGAAATCGT CGCGCGCGAA GTGTTCATGC AGGAAGCGCA GAAGCAGGGC
CTGGACGCCA CCGACGACTA CAGGAACCAG CTCGAACTCG CCCGCCAGGC CATCCTGATC
CGCGCGCTGT TCGAGAACTA CCGCAAGACC AGCCCGGTCT CCGATGCCGA GGTGAAGGCC
GAGTACGACA AGTTCGTGGC GGCCAACGGC GGCAAGGAAT ACAAGGCCCG CCACATCCTG
GTCGAGACCG AGGACCAGGC CAAGAAGATC ATGGCCGACC TGAAGAAGGG CGCCAAGTTC
GAGGACATCG CCAAGAAGCA GAGCAAGGAC CCGGGATCGG GCGCCAACGG CGGCGATCTC
GACTGGGCCA ACCCCGCGAG CTTCGTGCCC GAGTTCTCCG AGGCAATGAT CAAGCTCAAG
AAGGGCGAGA CCACGCCCGC CCCCGTCAAG ACGCAGTTCG GCTACCACAT CATCCGCGTC
GACGATGTCC GCCAGGCGCA ACTGCCGAAG CTGGAAGAAG TTCAGCCGCA GATCACGCAG
CAGCTGCAGC AGCAGCGCCT GCAGAAGTAC CAGGAAGAAC TGCGCGCGAA GGCCAAGGTC
GAGTAA
|
|---|
| Protein sequence | MKKQLLQAVA AAALLGAIPL AAVAQNAAIV NGKPVPKARM DVLAQQLAAA GRPVTPEMQG
QLREEIVARE VFMQEAQKQG LDATDDYRNQ LELARQAILI RALFENYRKT SPVSDAEVKA
EYDKFVAANG GKEYKARHIL VETEDQAKKI MADLKKGAKF EDIAKKQSKD PGSGANGGDL
DWANPASFVP EFSEAMIKLK KGETTPAPVK TQFGYHIIRV DDVRQAQLPK LEEVQPQITQ
QLQQQRLQKY QEELRAKAKV E
|
|---|
| |