| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2932 |
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| Symbol | |
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| ID | 7972208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3084586 |
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| End bp | 3086229 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793517 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_002944818 |
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| Protein GI | 239815908 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0465511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGGTT TGATGCAAGA CCAACCGCTC TTGATCTCGT CGCTGATCGA GTTCGCCGAG
CGCCACAACG GCGACGGCGA GATCGTCTCG CGCCGGGTCG AGGGCGACAT CCACCGCACG
ACGTGGGGCG GGATCGCATC GCGCGCCCGG CAGGTGGCCA ATGCGCTGGA CGGCGAGCAG
CTGCTGTTCA GCGACCGCAT CGCCACGCTG GCGTGGAACG GCTACCGGCA CCTGGAGCTG
TACTACGGCG TGAGCGGCAG CGGCCGCGTG CTGCACACCA TCAACCCGCG CCTGCACCCC
GACCAGATCG CCTGGATCGC CAACCACGCC GAAGACCAGA TCCTGTGCTT CGACCTGAAC
TTCCTGCCGC TGGTGCAGGC AGTGCATGCC AAGTGCCCCA CGGTGCGCAA ATGGATTGCC
CTGTGCGACG CCGACAAGCT GCCGGCGGAC AGCGGCGTGC CCAACCTCGT GAGCTACGAA
AGCTGGATCG GCGGGCAGTC CACCGCCTAC GACTGGCCCA CCTTCGACGA GAACTCGGCC
TCGAGCATGT GCTACACGAG CGGCACCACC GGCAACCCCA AGGCCGCGCT CTACAGCCAC
CGCTCGACCA TGCTGCATGC CTACGCCGCG GCCCTGCCCG ACGTCATGCG GCTGTCGGCG
CGCGACTCGG TGCTGCCGGT GGTGCCGATG TTCCACGTCA ACGCCTGGGG CATTCCGTAC
TCGGCCGCGC TGGTGGGCTG CAAGCTCGTG TTTCCGGGCC CGGCGCTCGA CGGCAAGTCG
GTGTACGAGC TGATCGAATC CGAGGGCGTG ACCTTCGCGG CCGGCGTGCC CACCGTGTGG
CAGATGATGC TCGGCCACAT GCAGGCCAAC GGCCTGAAGT TCAGCAAGCT CAACCGCACG
GTGATCGGCG GCTCGGCCTG CCCGCCGGCC ATGATCACGG CGTTCCAGGA GAACTACAGC
GTCGAGGTGC TGCATGCCTG GGGCATGACC GAGATGAGCC CGCTGGGCAC GCTGTGCACG
CTCAAGAACA AGCACCTGTC GCTGCCGCCC GATGCGCAGC TGCAGATCCG CATGAAGCAG
GGCCGCGCGA TCTTCGGCGT CGACATGAAG ATCGTCGACG GCGACGGCAA GGAGCTGCCC
TGGGACGGCA AGGCCTACGG CGACCTGTTG GTCAAGGGCC CCTGGATCGT GAAGGAATAC
TTCAAGGGCG AGGGCGGCGA TCCGCTCATC CGCGACGCGC AGGGCCGCGG CTGGTTCCCC
ACCGGCGACG TCGCCACCAT CGACGCCGAG GGCTACCTGC AGATCACCGA CCGCAGCAAG
GACGTGATCA AGTCCGGCGG CGAGTGGATC AGCTCCATCG AGATCGAGAA CATCGCCGTC
GCGCACCCGG CCGTGGCCAT GGCCGCCTGC ATCGGCGTGT ACCACCCCAA GTGGGACGAG
CGGCCGATCA TCGCGGTGGT GAAGAAGCCC AGCGCGGAGG TCGCGCGCGA GGAGCTGCTG
AAGTTCTACG AGGGCAAGAC GGCCAAGTGG CAGATCCCGG ACGACGTGGT GTTTGTCGAG
GCCATTCCGA TCGGCGCCAC CGGCAAGATC CTCAAGACCA AGCTGCGCGA ACTGCTCAAG
GACTACAAGC TGCCCACCTG CTGA
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| Protein sequence | MLGLMQDQPL LISSLIEFAE RHNGDGEIVS RRVEGDIHRT TWGGIASRAR QVANALDGEQ
LLFSDRIATL AWNGYRHLEL YYGVSGSGRV LHTINPRLHP DQIAWIANHA EDQILCFDLN
FLPLVQAVHA KCPTVRKWIA LCDADKLPAD SGVPNLVSYE SWIGGQSTAY DWPTFDENSA
SSMCYTSGTT GNPKAALYSH RSTMLHAYAA ALPDVMRLSA RDSVLPVVPM FHVNAWGIPY
SAALVGCKLV FPGPALDGKS VYELIESEGV TFAAGVPTVW QMMLGHMQAN GLKFSKLNRT
VIGGSACPPA MITAFQENYS VEVLHAWGMT EMSPLGTLCT LKNKHLSLPP DAQLQIRMKQ
GRAIFGVDMK IVDGDGKELP WDGKAYGDLL VKGPWIVKEY FKGEGGDPLI RDAQGRGWFP
TGDVATIDAE GYLQITDRSK DVIKSGGEWI SSIEIENIAV AHPAVAMAAC IGVYHPKWDE
RPIIAVVKKP SAEVAREELL KFYEGKTAKW QIPDDVVFVE AIPIGATGKI LKTKLRELLK
DYKLPTC
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