| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2925 |
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| Symbol | |
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| ID | 7972201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3075426 |
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| End bp | 3077531 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793510 |
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| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
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| Protein accession | YP_002944811 |
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| Protein GI | 239815901 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.138182 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCTG AATACAAAGT GCTCGGCGAT GTCGCCGTGA TCACAATGAC CAACCCTCCG
GTCAACGGTC TCGGTTTCTC GACCCGCATC GGCATCACCG ATGGGCTCGC GAAGGCCAAT
GCCGACGACG CCGTCAAGGC CATCGTCATC ACCGGCGCCG GCAAGGCGTT CTCGGGCGGT
GCGGACATCA AGGAATTCGG CACGCCCAAG GCGCTGCAGG AGCCCAACCT GCTGAGCGTG
ATCCTTGCGC TCGAGGCTTC GCCCAAGCCG ATCGTCGCGG CGATCCACTC GGTGTGCATG
GGCGGCGGCC TCGAGCTGGC GCTCGGCTGC CACTACCGCG TGGCGGCGCC CGGCACCAGC
ATTGCGCTGC CCGAGGTCAA GCTGGGTCTG ATTCCCGGCG CCGGCGGCAC GCAGCGCCTG
CCGCGCGTGC TGGGCGTGGA GACCGCGCTC AACATGATCG TGAGCGGCGA GTCCGTCAAG
AGCGAACTGC TCGCCGGCCT GCCGGGCCAG AAGCTGTTCG ACAAGCTCGC GGCCTCGCCC
GAATCGGTGT TCGAGGAAGC CCTTGCATTC GCCAAGAGCG TGGCGGGCAA GACCGGCGAC
GCGCTGCCGC TGGTGCGCAA CCTGCCGTGC AAGCACCCGC AGGGCGATGC CTACTTCCAG
TTCGCGAAGA ACATGGTCGG CGGCATGTCG AAGAACTACC CGGCGCCGCT CAAGTGCGTC
GACGCCGTTC AGGCTGCCAC CAAGATGAAG TTCGACGAAG GCATGGCCGA GGAGCGCCGG
ATCTTCACCG CGCTGATGTT CACGCCCGAA TCGCTGGCGC TGCGCCACCT GTTCATGGCC
GAGCGCGCGG CCTCCAAGAT TCCAGACGTG CCCGAGGACA CGCCCAAGCG CGAAGTCAAG
TCGGTGGGCG TGATCGGCGC CGGCACCATG GGCGGCGGCA TCTCGATGAA CTTTTTGAAC
GCGGGCATTC CCGTGAAGAT TCTCGAGATG AAGCAGGAAG CGCTCGACCG CGGCATTGCC
ACCATCAAGA AGAACTACGA ATCGCAGGTC AAGAAGGGCA AGCTCAAGCA GGACAAGTAC
GAGCAGCGCA TGGCGCTGTT GAGCACCACG CTCGACTACA ACGACCTGAA GGATGCCGAC
CTGATCATCG AAGCCGTGTT CGAGGAACTC GGCGTGAAGG AGAAGGTGTT CAAGGAACTC
GACCGCGTGG CCAAGAAGGG CGCGATCCTG GCTTCCAACA CCTCGACGCT CGACGTCGAC
AAGATCGCAG CCTTCACCCA GCGCCCGCAG GACGTGGTCG GCATGCACTT CTTCAGCCCG
GCCAACGTGA TGAAGCTGCT CGAAGTGGTG CGCGGCAAGG CCACGTCCAA GGACGTGCTG
GCCACGGTGA TGGACATTGG CAAGAAGATC AAGAAGACGG CCGTGGTCTC GGGCGTGTGC
GACGGCTTCA TCGGCAACCG CATGATCGAG CAGTACTCGC GCCAGGCCGG CTTCCTGCTG
GACGAGGGCG CCACGCCGCA GCAGGTCGAC AAGGCCGTCG AGAAGTTCGG CTTTGCGATG
GGCCCGTTCC GCATGGGCGA CCTGGCTGGC AACGACATCG GCTGGGCCAT CCGCAAGCGC
CGGGCCGTGG AGCATCCGGA CATGAAGTAC AGCCGCACGG CCGACAAGCT CTGCGAACTG
GGCCGCTTCG GCCAGAAGAC CGGGGCAGGG TGGTACGACT ACCAGGCCGG CAAGCGCGAT
GCGATTCCGT CGGAGCTCGT CAACAAGATG ATCGAGGACC ACCGCAAGGA ACTGGGCATC
ACGCCGCGCA AGATTTCCGA TGAAGAGATC GTGCAGCGCC TGGTGTATGC GCTGGTCAAC
GAAGGCGCGC ACATCCTGGA GGACGGCATT GCCTCGAAGT CGGGCGACAT CGACATGGTG
TACCTCACCG GCTACGGCTT CCCGGTCTGG CGCGGCGGCC CGATGCACTA CGCGTCGCAG
GTGGGCCTGT ACAACGTGGC CGAAACCATG AAGCGCTTTG CCAAGAACCC GCGCGACGAT
GCCGAGTTCT GGCAGCCTGC GCCGCTGATC CAGAAGCTGG TGGCCGAAGG CAAGCAGTTC
AGCTGA
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| Protein sequence | MTAEYKVLGD VAVITMTNPP VNGLGFSTRI GITDGLAKAN ADDAVKAIVI TGAGKAFSGG
ADIKEFGTPK ALQEPNLLSV ILALEASPKP IVAAIHSVCM GGGLELALGC HYRVAAPGTS
IALPEVKLGL IPGAGGTQRL PRVLGVETAL NMIVSGESVK SELLAGLPGQ KLFDKLAASP
ESVFEEALAF AKSVAGKTGD ALPLVRNLPC KHPQGDAYFQ FAKNMVGGMS KNYPAPLKCV
DAVQAATKMK FDEGMAEERR IFTALMFTPE SLALRHLFMA ERAASKIPDV PEDTPKREVK
SVGVIGAGTM GGGISMNFLN AGIPVKILEM KQEALDRGIA TIKKNYESQV KKGKLKQDKY
EQRMALLSTT LDYNDLKDAD LIIEAVFEEL GVKEKVFKEL DRVAKKGAIL ASNTSTLDVD
KIAAFTQRPQ DVVGMHFFSP ANVMKLLEVV RGKATSKDVL ATVMDIGKKI KKTAVVSGVC
DGFIGNRMIE QYSRQAGFLL DEGATPQQVD KAVEKFGFAM GPFRMGDLAG NDIGWAIRKR
RAVEHPDMKY SRTADKLCEL GRFGQKTGAG WYDYQAGKRD AIPSELVNKM IEDHRKELGI
TPRKISDEEI VQRLVYALVN EGAHILEDGI ASKSGDIDMV YLTGYGFPVW RGGPMHYASQ
VGLYNVAETM KRFAKNPRDD AEFWQPAPLI QKLVAEGKQF S
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