| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2909 |
|---|
| Symbol | |
|---|
| ID | 7970798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3058452 |
|---|
| End bp | 3059414 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644793494 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002944795 |
|---|
| Protein GI | 239815885 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.441228 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGCA TCGACGTCAA TCGCTCCGGC GAAATGGAAG CCTTTGTGCA GGTGGTCGAA
TCCGGCGGGT TTTCCGCGGC GGCGCGGCTG CTCGACATGA CGCCCTCGGC CGTGAGCAAG
CTGGTCGCGC GGCTCGAGCT GCGGCTGGGC ATCCAGCTGG TGTACCGCTC CACGCGCAAG
CTGCAGCTCA CGCCCGAAGG CCTGCATTTC TACGAGCGCA GCACGCGCGT GCTGGCCGAC
ATGGACGAGG CCGAGCGCTG CGCCGCCGCG GGTGCTGCGC CGCGCGGGCG CGTGAGCATC
AACGCGAGCG TGTCCTTCGG GCACCACAAG CTGGTGCCGC TGGTGCCGCG CCTGCTCGAG
CTGCATCCGC AGATCACGCT GGACATTGCG CTGACCGACC GCATCGTCGA CCTGATGGAC
GAGCGCGCCG ACATCGCGAT CCGCTGGGGC CAGCTGCCGC CGTCCGACCT GGTGGCGCGG
CGCCTGGGCG AGACCAGCCA GTCCATCGTG GCCTCGCCAG GCTACCTTGC GAAGTACGGT
ACGCCGCGCA CGCCGCAGGA GCTGGAGGCG CACAACCGCC TGGGTTGGAG CTACCGCCGC
AATACGCCCG ACTGGCCCCT GCGCGTGGAT GGACGAATGA TTGCGGTGCC CGTGGCCGGG
CCGGTGCGCG CGGGCGACGG CGAAACCCTG CGCCAGCTGG CGATTGCCGG CGCCGGCGTG
GCGCGGTTGT CGCTGTACCA CGTCCAGCAC GACATCGATG CCGGCCGGCT GGTGCCGCTG
CTCGAGGAAT TCAACCCCGG CGAGGTGGAG CCGATCCATG CGGTGTACAT CGGCAAGGCC
GGCACGCTGC CGGCGCGCGT GCGCGCGGTG CTCGACTTCC TGGTGGCGTA CTCGGGCGTG
GGAGGAGGGC GCTACACGCT CAAGCGCAGC GCGCCGATGC CCGCGAACTC CACCGCCACC
TGA
|
|---|
| Protein sequence | MPRIDVNRSG EMEAFVQVVE SGGFSAAARL LDMTPSAVSK LVARLELRLG IQLVYRSTRK
LQLTPEGLHF YERSTRVLAD MDEAERCAAA GAAPRGRVSI NASVSFGHHK LVPLVPRLLE
LHPQITLDIA LTDRIVDLMD ERADIAIRWG QLPPSDLVAR RLGETSQSIV ASPGYLAKYG
TPRTPQELEA HNRLGWSYRR NTPDWPLRVD GRMIAVPVAG PVRAGDGETL RQLAIAGAGV
ARLSLYHVQH DIDAGRLVPL LEEFNPGEVE PIHAVYIGKA GTLPARVRAV LDFLVAYSGV
GGGRYTLKRS APMPANSTAT
|
|---|
| |