| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2901 |
|---|
| Symbol | |
|---|
| ID | 7970790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3048411 |
|---|
| End bp | 3049325 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644793486 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002944787 |
|---|
| Protein GI | 239815877 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.108446 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCTC GAGAACCGCC CCTCAACGCC GTGCGCGCCT TCGTCGCCGC GGCCCGCCAC
CAGAGCTTCA CGCGGGCGGC CATCGAGCTC CACGTGACGC ACAGCGCGGT GAGCCGGCAG
ATCAAGAGCC TGGAGGAATG CCTGGGCGTC GCGCTGTTCG AGCGCCGCAT CCGCCAGGTC
GCCCTGACCG CGGAAGGACA GCAGTTCTTT GCCGAGGCAG GCCCGGCCAT CGCGCAGATC
CATGCGGCGG CGCGTGCATT GCAGGCGCAA GGCCCGGCCC GTGCCGTGCG GATCAACGTG
CGGCCCTCCT TCGCGGTGCG GTGGCTCATT CCGCGGCTGC CCTTGTTCGT CGAGCGCCAT
CCCGAGATCG AGCCGCAGGT GGTCACGAGC ACGGTCATGC CCGAGCAGGC CGCGGGCAGC
TTCGACATCG CGGTGCGCCG CGGGCTCGAG GGCTGGCCGC CCTCCATCGA GGTGCGCCCC
TTCCTCGAAG ACGAGGTGCT GGTGGTCGGC GCACCGGCGC TGTTCAAGGC GCATCCGCTC
GCGGACCTGC GCGCGCTGGC CTCGCACGTG CAGCTGTCGG CCCGCACGCG CAAGGAAGAC
TGGGACGCCT GGAAGAAGCA CGTCGGCGCA CCGCGCGCCA AGCCGGCGGG GCGGCTGCAG
TTCGACCACC TGCACTTCGT GCTGCAGGCC GCGGTCGACG GGCTCGGCAT TGCATTGGCA
CCGACCTCGC TGGTGGCGCA CGACCTGGCC TCGGGCCGGC TGCAGTCGCC GCTGCCCGCG
CTGCGCATGC CGCTGAACCG CTACTACTAC GGCCTCTCGC CCGACGCCGC GCCGGAAGCC
GCGTACGTCG CGCAATGGTT CGAGGAAATG ATGGCCTCGG ACTCGCAAGG CGCGATGGCG
CTCGCAGGTC CGTGA
|
|---|
| Protein sequence | MPPREPPLNA VRAFVAAARH QSFTRAAIEL HVTHSAVSRQ IKSLEECLGV ALFERRIRQV
ALTAEGQQFF AEAGPAIAQI HAAARALQAQ GPARAVRINV RPSFAVRWLI PRLPLFVERH
PEIEPQVVTS TVMPEQAAGS FDIAVRRGLE GWPPSIEVRP FLEDEVLVVG APALFKAHPL
ADLRALASHV QLSARTRKED WDAWKKHVGA PRAKPAGRLQ FDHLHFVLQA AVDGLGIALA
PTSLVAHDLA SGRLQSPLPA LRMPLNRYYY GLSPDAAPEA AYVAQWFEEM MASDSQGAMA
LAGP
|
|---|
| |