Gene Vapar_2898 details

Gene Information

• Locus tag: Vapar_2898
• ID: 7970787
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3044664
• End bp: 3046529
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644793483
• Product: peptidase M48 Ste24p
• Protein accession: YP_002944784
• Protein GI: 239815874
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0501] Zn-dependent protease with chaperone function

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0804382
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCTCG CCCGAACGAT CCATGCCGAC CTCTTTCGCG TCTTCCTTCT GACCCTGGTG 
TCGCTCTTCG CCATTCCGGC GGCGACGCTG GTCTTCACGG AGTACGCGCT GCGCACGGAG 
GACGCCGAAT TCCTGCAGGC GATCGAGAAG CGCATCGCCT CCGACACCAG TCTGTCCGCC 
GGCAACAAGG CGCAGGCCAC CGAGTTCTAC CGCAGCCACC CGCTCTCCAA GGCCTGCAGC 
GCGACCGCGC CCGAAGACAA GAACTACCAC GACAAGGTGT GCAGCCCCTA CTCGATGCAC 
TGGCAGTTCC ACTGGGCCGA CCGCGCCGCC GGCTGGACGC TGGTTCTGGG CGCCGCCCTG 
CTCGCGGCGG CGCTGGTGCT GGGCGCATTG GCCTTTGCCA ACCGGGGCCT GCGCTATGCG 
AGCTTCTTGG CGGGCTGGCG GCTCATGACG GTGTCGAGCG CGCTCGAGGT CGCGCTGCAG 
GGCGCGATGC TGGTGTGGCT GTCGTTCTGG GTCACGGCCT ACTTCTGGCA CAGCTACTAC 
GTCAAGCTGA TCATCATCGC GGGCATCGCG GCCGCGGTGG CCGTGTTCTA TGCGATCTAC 
ACGCTGTTCA AGAAGCTGCC CTTCGGCAAC GAGATCGAGG GCGAAGTGGT GGCCGAGGCC 
GATGCGCCGC GCCTGTGGGA TCGCATCCGC CAGCTGGCCG CGCGCGTGAA GACCGCGCCG 
CCCGACCAGA TCGTGGCCGG CATCGACACC AACTTCTTCG TCACCGAGGC GCCCTGCGAG 
GTGGGCGGGC GCACGCTGCA AGGCCGCACG CTGTTCGTGA GCATTCCGCT GCTGCGCGTG 
CTCGACCAGT CGGAGGCCGA CGCGGTGCTG GCGCACGAGC TGGCCCACCT GGGCGGCGGC 
GACACCCGCA GCAGCGCGGC GCTCGGCCCC AAGCTGCTGC AGTTCGACCA GTACACCTGG 
AAGATGCGCG ACGGCGGCCT GAGCATCGTG GCGCACTACC TGCTGCGCCT GTATCGCATG 
ATCTTCGCCT TTGCCCTGGC GCGCGACAGC CGCGAGCGCG AATACAAGGC CGACAGCGTG 
TCCGCGAGCC TCACGGCGCC CGGCGCCATC GTGCAGTCGC TCATCAAGAT CGCGGCCTAT 
GCGAGCTACC GCAACGACGT CGAACGCAAG CTCTTTGCGC AGGACCGCCA GCACGACGGC 
GCGCTCGGCA TCGCGGGCTT CGTGGCCGCC GGCCTGCCGC CCTATGCCAG TTCGGATGCG 
TTCGTCGAGA CCATGAAGAC CGCCGACGTG CCGCACCCCT ACGACAGCCA TCCGCCGCTG 
CTCGAACGCA TGCGCAACGT CGGCCACCAT GTGCCCGAAA GCGCCTACGG TGCCATCGTC 
GCGACTGCGC CCGCGGCCTC GTGGGCCGAC GACATCGAAA CCGCCGCCGC CATCGAACAG 
CGGCTGTGGA GCGACTACGA GCAGCGCTTC GTGCAGAACC ACGAACTGAG CCTCGCCTAC 
CGCTACGAAC CGGCCACCGA GGAGGAGCGC GCCGTGGTGC TGCGCCACTT TCCGCCGGTT 
GCCTTCGCGC TGAAGAACGG CGAGAGTATC GAGGTGAGCC ATGCGGGCCT GCGCCAGAGC 
GTGGATGGCG GCTCGACCGT CGGCTGGGAC GAGGTCAAGG ACCTGACCTT CCAGGACAAC 
ACCTTCGGCG ACCTGCTGGT GGTCACGCAC CACGACAAGG GCATGCTCGG CGCGCGCACC 
ACCAAGCTCA AGGTGGGCGG CCTCGGCAAG CAGAAGGAGA ACTTCAAGGG CGCAGTGGGC 
CGCTACTGGC AGCGCCACCA GATCATGCGG GCGCAGCAGC AGCAACAGGC CTCGCCCGAG 
CCCTGA 

 

Protein sequence

MALARTIHAD LFRVFLLTLV SLFAIPAATL VFTEYALRTE DAEFLQAIEK RIASDTSLSA 
GNKAQATEFY RSHPLSKACS ATAPEDKNYH DKVCSPYSMH WQFHWADRAA GWTLVLGAAL 
LAAALVLGAL AFANRGLRYA SFLAGWRLMT VSSALEVALQ GAMLVWLSFW VTAYFWHSYY 
VKLIIIAGIA AAVAVFYAIY TLFKKLPFGN EIEGEVVAEA DAPRLWDRIR QLAARVKTAP 
PDQIVAGIDT NFFVTEAPCE VGGRTLQGRT LFVSIPLLRV LDQSEADAVL AHELAHLGGG 
DTRSSAALGP KLLQFDQYTW KMRDGGLSIV AHYLLRLYRM IFAFALARDS REREYKADSV 
SASLTAPGAI VQSLIKIAAY ASYRNDVERK LFAQDRQHDG ALGIAGFVAA GLPPYASSDA 
FVETMKTADV PHPYDSHPPL LERMRNVGHH VPESAYGAIV ATAPAASWAD DIETAAAIEQ 
RLWSDYEQRF VQNHELSLAY RYEPATEEER AVVLRHFPPV AFALKNGESI EVSHAGLRQS 
VDGGSTVGWD EVKDLTFQDN TFGDLLVVTH HDKGMLGART TKLKVGGLGK QKENFKGAVG 
RYWQRHQIMR AQQQQQASPE P