| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2893 |
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| Symbol | |
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| ID | 7970782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3038770 |
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| End bp | 3040416 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793478 |
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| Product | Mammalian cell entry related domain protein |
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| Protein accession | YP_002944779 |
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| Protein GI | 239815869 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3008] Paraquat-inducible protein B |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.3428 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGACG ACGAAGCCAG ACCCCCCAAC GATCCATCGG CCCCGCCCGG GCTTCCTGCG
CCGCGCGTGG TGCGCCGGCG CGAATGGCTG CCCTCGCTGA TCTGGCTGAT CCCCATCGTT
GCCGCGCTGG TCGGCGTGAT GCTGGTGGTC CGGATCCTGA TGCAGCGCGG GCCCGAGATC
GTGCTCACCT TCAACACGGC CGAAGGCCTG GAGGCCAACA AGACGGCCGT CAAGTACAAG
GACGTGCAGA TCGGCACGGT GCAGAGCCTG AAGCTCGCGC GCGACCGCTC GCATGTGCGC
GTGACCGTGC AGCTCAGCAA GGAAGCCGAG AGCTTCACCG CCGAGGATTC GCGCTTCTGG
GTGGTGCGGC CACGGCTCGA CACCTCGGGC ATCTCGGGCC TGGGCACCTT GCTGTCGGGC
GCCTACATCG GCGCCGACGC GGGCGTGTCG AACGAGACCG CGAGCGAGTT CAAGGGACTG
GAGGTGCCGC CGATCGTCAC GCGCGACGCC TCGGGCCAGC AGTTCCTGCT GCGCGCCACC
GACGTGGGCT CGCTCGACGT GGGCTCGCCG GTGTATTTCC GGCGCATCAA GGTGGGCCAG
GTGGCCGCCT ACGAACTCGA TGGCGACGGC CGCGGCGTGA CGCTGCGCAT CTTCGTGAAT
GCGCCCTACG ACAAGTTCGT GGGCGTCAAC ACGCGCTTCT GGCAGGCCAG CGGCATCGAC
GCGCAGCTCA GCGCCAGCGG CTTCACGCTG CGCACGCAGT CGCTCGCCAC CATCCTGCTC
GGCGGCATCG CCTTCCAGGC GCCCGACGAC GCCATGGGCC CGCTGGCCAA GGAGAACACG
GCCTTCACGC TGGCGCAGGA CGAAACCGCG GCCATGAAGG AGCCCGACGG CCCGCCGCAG
ACGCTGCTGA TGTACTTCAA CCAGTCGCTG CGCGGCCTCA CGCCGGGGGC GCCGGTCGAT
TTCCGCGGCG TGGTGATCGG CGAGGTCAAG TCGATCGGCG TGGAGTTCGA CCGCGCCGAG
CGCGAGTTCC GCATGCCGGT GCTGGTGCAG GTCTATCCGG ACCGGCTGCG CCGCCGCGCG
GGCGAGAGCG GCGTGGAGTC GCGCGCCACC CAGCAGGAGC GGCTGCGCTT CCTGGCCGAG
AAGGGGCTGC GCGCGCAGCT GCGCAACGGC AACCTGCTGA CCGGGCAGGT GTACGTGGCG
CTCGACTTCT TTCCCAAGGC GCCGCCGGCC CGCATCGACG TGACGAAGAA CCCGATCGAG
CTGCCCACCA TCGCCAACAG CCTCGACGAG ATCCAGTCGC AGGTGCAGGA GATCGCAAGC
AAGCTCAACA AGGTGCCCTA CGAGCAGATT GCGGCCGACC TGCGCACCAC GCTCGCCTCG
CTCAACAAGA CGCTGGCCAG CACCGAGCAG GCGGTGAACC GCATCAACAC CGACCTGACG
CCCGAACTGG CCGCCGCCAT GAAGGACGTG CGCAAGACCG TCAACAGCGC CGAGCGCACG
CTGGCCGACG ACTCTCCGCT GCAGCAGGAC ATGCGCCAGA CGCTGCGCGA ACTCACGCGC
GCCGCGGGCT CGGTGCGCGT GCTGACCGAC TACCTCGAGC GGCACCCCGA ATCGCTCCTG
CGCGGCAAAC CGGACGACAA GAAATGA
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| Protein sequence | MSDDEARPPN DPSAPPGLPA PRVVRRREWL PSLIWLIPIV AALVGVMLVV RILMQRGPEI
VLTFNTAEGL EANKTAVKYK DVQIGTVQSL KLARDRSHVR VTVQLSKEAE SFTAEDSRFW
VVRPRLDTSG ISGLGTLLSG AYIGADAGVS NETASEFKGL EVPPIVTRDA SGQQFLLRAT
DVGSLDVGSP VYFRRIKVGQ VAAYELDGDG RGVTLRIFVN APYDKFVGVN TRFWQASGID
AQLSASGFTL RTQSLATILL GGIAFQAPDD AMGPLAKENT AFTLAQDETA AMKEPDGPPQ
TLLMYFNQSL RGLTPGAPVD FRGVVIGEVK SIGVEFDRAE REFRMPVLVQ VYPDRLRRRA
GESGVESRAT QQERLRFLAE KGLRAQLRNG NLLTGQVYVA LDFFPKAPPA RIDVTKNPIE
LPTIANSLDE IQSQVQEIAS KLNKVPYEQI AADLRTTLAS LNKTLASTEQ AVNRINTDLT
PELAAAMKDV RKTVNSAERT LADDSPLQQD MRQTLRELTR AAGSVRVLTD YLERHPESLL
RGKPDDKK
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