Gene Vapar_2888 details

Gene Information

• Locus tag: Vapar_2888
• ID: 7970777
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3033811
• End bp: 3034386
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644793473
• Product: hypothetical protein
• Protein accession: YP_002944774
• Protein GI: 239815864
• COG category: [S] Function unknown
• COG ID: [COG3644] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.436912
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCATCCG ACACGCCACC CGGCAACCTG ATAGTTTTTG CCGACTTCAA ATGCATCGCC 
CAGGGAAGCA CCGCCGACGT GCTCGCGCAA CTGCGTGAGC GCAAGGACGA CACGCCCTAC 
CTGGTGTTCA ACGAACAGAC CGGTGAACTG CTCGACTTCG ACCTGCACAA CCGGGCCGGC 
GCCGTGGCGC ATGCGGCCAG CGCCGAGACC GCCGAGGAAG CCCCGCGCAG CGTGGGCCGC 
CCCAGGCTCG GCGTGGTCGC GCGCGAAGTC ACCCTGCTGC CGCGCCACTG GGATTGGCTC 
AACCGCCAGC CCGGCGGCGC CTCGGTCGCA CTGCGGCGGC TGGTCCAGGA AGCGAGCCGC 
GTCAATGCCG ACCGCGACGC CGTGCGCGCA TCGCGCGAAG CCGCCTACCG CTTCATGACC 
GCAATCGCCG GCGCCCTGCC CAGCTTCGAG GAAGCCACGC GCGCGCTGTT CGCGGGCGAG 
CGCGAGCGCT TCGAGGCGCT GATCGGCTCC TGGCCCGCGG ACCTGCGCAT CCACCTTCAA 
AAATTGTCTG CCGCCGGCTG GAGCACCACC GCATGA 

 

Protein sequence

MPSDTPPGNL IVFADFKCIA QGSTADVLAQ LRERKDDTPY LVFNEQTGEL LDFDLHNRAG 
AVAHAASAET AEEAPRSVGR PRLGVVAREV TLLPRHWDWL NRQPGGASVA LRRLVQEASR 
VNADRDAVRA SREAAYRFMT AIAGALPSFE EATRALFAGE RERFEALIGS WPADLRIHLQ 
KLSAAGWSTT A