| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2881 |
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| Symbol | |
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| ID | 7970770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3028186 |
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| End bp | 3028845 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793466 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002944767 |
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| Protein GI | 239815857 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.262852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTTCG ACTGGTCCGT GATCTGGACG CACCGCCAGG CCTTGCTCGA AGGCGCGGCG
CTCACCGTGG GCCTCACGGT GCTGACCATG CTGCTGGCCG TGCCGGGCGG CATCGTGCTG
GCACTGATGC GGCTGTCGTC CAACAAGCTG CTGCAGTCGG CCTCGCTCGG CTTCGTGGAG
TTCTTCCGCA ACCTGCCGCT GATCCTGGTG ATCTACTGGG TCTTCTACGT GATGCCGATG
GCGGTGGACT TCCAGCTGTC GCCGCTCGTC ACCGCGCTGG TGGCGCTGGT GCTCAACATC
TCGGCCTACA ACGCCGAGAC CTTCCGCGCC GGCATCAACT CCATCCGCAA GGGGCAGCTG
GAGGCGGCGC TTGCCATGGG CATGTCGCGC CGCCAGGCCA TGTTCAAGGT AGTCATTCCG
CAGGCGGGCC GCCGCATCCT GCCGGTGATC GCGAGCACCT GGGTCTCGCT CTTCAAGGAC
ACCTCGCTGG TGTCCGTGAT CGCCGTGAGC GAACTGGCCT ACACGGCGAT GCAGATCCGC
GCGCAGACCT TCCGCGTGCT GGAAATGCTC ACCGCCATGG CCGTCCTCTA CTGGCTGATG
GGCTACCCGC AAGCCAAGCT GGTGGACTGG ATCCACCGCA AATATGGAGT CAAGGAATGA
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| Protein sequence | MTFDWSVIWT HRQALLEGAA LTVGLTVLTM LLAVPGGIVL ALMRLSSNKL LQSASLGFVE
FFRNLPLILV IYWVFYVMPM AVDFQLSPLV TALVALVLNI SAYNAETFRA GINSIRKGQL
EAALAMGMSR RQAMFKVVIP QAGRRILPVI ASTWVSLFKD TSLVSVIAVS ELAYTAMQIR
AQTFRVLEML TAMAVLYWLM GYPQAKLVDW IHRKYGVKE
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