| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2880 |
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| Symbol | |
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| ID | 7970769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3027504 |
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| End bp | 3028169 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793465 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002944766 |
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| Protein GI | 239815856 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.27836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTCG ACTTTTCCCC GATTGCCGAC AACTGGCGTT TCTTCGCCAG CGGCCTGGGC
GTGACGGTCG CGCTGAGCCT GATCAGCGCA GTCACCAGCA TCCTCGCGGG CCTGGCGATC
GCGCTGCTGC GGCTGTACGG CCCCGGCTGG CTGCGCCGGC TGCTCGTGTT CTACATCGAC
TCGATGCGCG CCATTCCGGT GCTGGTGGTG CTGGTGTGGA TGTACTTCGC GTTCCCGCTG
CTCGTGGGCT TCACCTTCGC GCCGTTCTGG GCCGCGGTGA TCGCGCTGAC GCTGCACATC
GCGGCCTATG CGGCCGAGGT GATCCGCGCG GGCATCGAGT CGATCCGGCC GGGCCAGACG
CGCGCCGCAT TGGCGCTGGG CATGTCGCGT GCGCAGCTGC TGCGCAAGGT GCTGCTGCCG
CAGGCCACCA TCCGCATGCT GCCGGCTTTC GGCTCGATCC TCACCATCGC CATCAAGGAC
ACGGCCATTG CCACCGTGAT TGCCGTGCCC GAGCTGATGC ACCGCGCCGA AACGGTGGCG
GGCCAGAGCT ACCGGCCGGT GGAAGTGTTC ACCGCGGTGA TGGTGGCGTA CTTCGCGATC
CTGTTCCCGG TCACGCGCGG CATCGACCGG CTCTACCACC GCGTCGCGCA CCTGGGGCGT
TCATGA
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| Protein sequence | MEFDFSPIAD NWRFFASGLG VTVALSLISA VTSILAGLAI ALLRLYGPGW LRRLLVFYID
SMRAIPVLVV LVWMYFAFPL LVGFTFAPFW AAVIALTLHI AAYAAEVIRA GIESIRPGQT
RAALALGMSR AQLLRKVLLP QATIRMLPAF GSILTIAIKD TAIATVIAVP ELMHRAETVA
GQSYRPVEVF TAVMVAYFAI LFPVTRGIDR LYHRVAHLGR S
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