| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2878 |
|---|
| Symbol | |
|---|
| ID | 7970767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3025558 |
|---|
| End bp | 3026412 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644793463 |
|---|
| Product | extracellular solute-binding protein family 3 |
|---|
| Protein accession | YP_002944764 |
|---|
| Protein GI | 239815854 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.577493 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCACACA TCCCCCGCAC TTTCCTCGGC CGCAAGCTGG CCCGCGCAGC ACTCGCGGCC
GCCCTGGCCG GCAGCTGCAT CGGCGCACTG GCGCAGACGC CGCCGCCACC CGGCGCGAGC
CCGCGCATCG ACGCCATCCG CAAGGCCGGC GTGCTGCGCG TGGGCGTGGT CAACAACCCG
CCCTGGCTCG CGCAGAACAC CGCGGGCGAC GGCGAGCCGT GGTCCGGCCC GTCGTGGACG
CTGGGCAAGG AGTTTGCGAA GCTGCTGGGC GTGAAGGTGG AGCCCGTGCC GGTGAGCCAT
GAGACCAAGG TGCCGTCGCT CACGGCCAAC CAGATGGACA TCATGATCGG GCCGCTGAAC
GAGACCGCCG AGCGCGCCAA GATCATCGAC TTCGTCACCT TCTCGAGCAC CGGGGTGTGC
ATGTTCGGCC GCGCCGACAA CCCGAAGTTC ACCAGCGCGC GCACCCTGGA AGACTTCAAC
AAGCCCGAGA TCACCATGGC GTATTTCTCG GGCGCGGGCG AGGAGCCGCT GGTGCGCCAG
CAGTTCGCGA AGGCCAAGCT GCGCGGCGTG GCCAACTCCG GTTCGGTCGC GCCCATCGAA
GAGGTGCTGG CCGGCCGCTC CGACGTGGCG CCGCTCAACC GCATGCTGTG GCCCAACATC
AGCAAGAAGG TCAAGGGACT GGCCGTGTTC CCCAAGGAGA ACGACTGCCA GGACAGCAAG
ATCTTCCAGA TCCAGACCGG CATGGGCGTG GCGAAGGACC AGCAGGTGTA CCTCGACTGG
CTGCGCGCCG TGGCCCAGCG CATGCAGCCC GCGCTCAGCG AAGAAGAGCG CCGCATGACG
CAGAACCTGA AGTAA
|
|---|
| Protein sequence | MPHIPRTFLG RKLARAALAA ALAGSCIGAL AQTPPPPGAS PRIDAIRKAG VLRVGVVNNP
PWLAQNTAGD GEPWSGPSWT LGKEFAKLLG VKVEPVPVSH ETKVPSLTAN QMDIMIGPLN
ETAERAKIID FVTFSSTGVC MFGRADNPKF TSARTLEDFN KPEITMAYFS GAGEEPLVRQ
QFAKAKLRGV ANSGSVAPIE EVLAGRSDVA PLNRMLWPNI SKKVKGLAVF PKENDCQDSK
IFQIQTGMGV AKDQQVYLDW LRAVAQRMQP ALSEEERRMT QNLK
|
|---|
| |