Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2876 |
Symbol | |
ID | 7970765 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3023878 |
End bp | 3024615 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644793461 |
Product | GntR domain protein |
Protein accession | YP_002944762 |
Protein GI | 239815852 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCCTCA AGCTCATTCA CCCATCCTCC GAAGCGATGT CGAAAATCGG CCAACCTCCA ATGGAGAAGC CGTACCAGCG CCTGGCTGCC AATATCCATG AATTGGTCAA ACAGGGTGAG TTTCTGGTCG GCCAGCGGCT GCCCTCCGAA CGGGCGCTGG CGGAGCGCTT CGACGTGAGC CGCACCTCGG TGCGCGAGGC CATCATTGCG CTGGAGCTGC AGGGCGTGGT CGAGGTGCGC GGCGGATCCG GCATCTACAT CTGCCAGCCG CAGGACGCGC CCACGCGGCT GCCGGTGGTG CAGGAAACCG GTGCCGGCCC CTTCGAGCTG CTGCGCGCGC GCTGCCTGAT CGAGTCCGAG ATCGCCTCGC TGGCGGCCAC CACGCGCAAG GACGCCGACC TCGACAAGAT GTTCGGCGCG CTCGCCACCA TGCGCGAGCA GATGCACGAC AAGGAAGCCA ACGAGGCGGC CGACCGCATG TACCACCTGC ACATTGCCGA ATCCACCGGC AACAGCGTGC TGCTGCAGAC GGTGACGAAT CTCTGGGACC AGGCCAAGGG CCCGATCTGG ACGCAGATCG AGCAGCACTT CCATTCGCCC GCACTGCGCC TCCAGTCGCA AGACGACCAC CAGCGCATCT TTGCCGCGAT CGTCTCGGGC GATGCCGAGG CCGCGCGGCT GGCCATGCGG GCGCACCTGG AACGCGTGAT CGGCGAGTTC GCCCAGAGCT GGCGCTAG
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Protein sequence | MALKLIHPSS EAMSKIGQPP MEKPYQRLAA NIHELVKQGE FLVGQRLPSE RALAERFDVS RTSVREAIIA LELQGVVEVR GGSGIYICQP QDAPTRLPVV QETGAGPFEL LRARCLIESE IASLAATTRK DADLDKMFGA LATMREQMHD KEANEAADRM YHLHIAESTG NSVLLQTVTN LWDQAKGPIW TQIEQHFHSP ALRLQSQDDH QRIFAAIVSG DAEAARLAMR AHLERVIGEF AQSWR
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