Gene Vapar_2854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2854 
Symbol 
ID7970743 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3000453 
End bp3001130 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content64% 
IMG OID644793439 
Productankyrin 
Protein accessionYP_002944740 
Protein GI239815830 
COG category[R] General function prediction only 
COG ID[COG0666] FOG: Ankyrin repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAT ACATCAAGAA GTTCTTGTAT CTTGCTGTCC TGGCAGCAAC TTTTTCCACC 
CACGCAGGCT CGTTCGAAGA TTTCTTCCGG GCCGTGCGCG CAGACAACGC GAGCGGCGTG 
CGCACCCTGC TGAACCGCGG TTTCGACCCC AACACGCGCG ACGAGCACGG CCAGACCGGC 
CTGATCATCG CGCTGCGCGA ACCGTCGCCC AAGGTGGTCC AGGTGCTGAT CGAATCGCCG 
CAGACCGACG TCGACATCGC CAACGCCAAG GACGAAACCC CGCTGATGCT GGCCGCCATC 
AAGGGCCAGC AGGACGTGGT CGCGCAGCTG CTCAAGCGCG ACGCCGCCGT CAACAAGACC 
GGCTGGACGC CGCTGCATTA CGCCGCCAGC AGCGGCCAGC TGAGCATCAT GAAGGTGCTG 
CTCGACAACT TTGCCTTCAT CGATGCGCAA TCGCCCAACG GCACCACGCC GCTCATGATG 
GCCGCGATGT ACGGCTCGAC CGAGGCCGTG AAGCTCCTGC TGGCCGAAGG TGCGGACACC 
ACCATGAAGA ACCAGCTCGG CATGACGGCG GTCGACTTCG CGAACAAGGC CAACCGCCCG 
GAGGCTGCGC AGCTGATCGC TGCTGCGGCC GGCGCCAAGG CGGACCTCAA GGCCATTCCG 
AAGGATGGCA AATGGTGA
 
Protein sequence
MKKYIKKFLY LAVLAATFST HAGSFEDFFR AVRADNASGV RTLLNRGFDP NTRDEHGQTG 
LIIALREPSP KVVQVLIESP QTDVDIANAK DETPLMLAAI KGQQDVVAQL LKRDAAVNKT 
GWTPLHYAAS SGQLSIMKVL LDNFAFIDAQ SPNGTTPLMM AAMYGSTEAV KLLLAEGADT 
TMKNQLGMTA VDFANKANRP EAAQLIAAAA GAKADLKAIP KDGKW