Gene Vapar_2839 details

Gene Information

• Locus tag: Vapar_2839
• ID: 7970728
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 2984940
• End bp: 2985350
• Gene Length: 411 bp
• Protein Length: 136 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644793424
• Product: protein involved in methylation
• Protein accession: YP_002944725
• Protein GI: 239815815
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0273449
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAGC ACTCGTTCCC GCGCAAGCGC AATGGCTTCA CATTGATCGA GCTGATGATC 
ACGGTGGCGA TCATTGCGAT CCTGGCGTCC ATCGCGTATC CCAGCTACCA GCAGTACATC 
ATCCGGTCCA AGCGCTCGGC GGCCCAGGCG CAGATGATGG ACATCGCCAA CCGCCAGCAG 
CAGTTCCTGC TGGCCAACCG CAGCTACGCC ACCAAGGACG CCCTCGCGGC CAGCGGCTAC 
ACGCTGCCCG CGGAGGTTGC GGCCAACTAC GGCTACACCA TCACGCTGCA GGACGCCGGC 
ACACAGGTGC CCAGTTTTCT CCTGACCTTC AGCCCCACGG GAAGCCAGCA GAGAGATGGC 
GACCTCACCC TCAACAACCA GGGCGTCAAG ACGCCGGCGG GCAAATGGTG A 

 

Protein sequence

MKKHSFPRKR NGFTLIELMI TVAIIAILAS IAYPSYQQYI IRSKRSAAQA QMMDIANRQQ 
QFLLANRSYA TKDALAASGY TLPAEVAANY GYTITLQDAG TQVPSFLLTF SPTGSQQRDG 
DLTLNNQGVK TPAGKW