| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2838 |
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| Symbol | |
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| ID | 7970727 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2984347 |
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| End bp | 2984946 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793423 |
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| Product | type IV pilus modification protein PilV |
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| Protein accession | YP_002944724 |
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| Protein GI | 239815814 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0708061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTGAGGC GCCATTTGTC TGCCGCACCG AACGGCCGAG GGCAGCGCGG CGCCACGCTG
CTCGAGGTGC TGGTCACGCT GCTGATCGTC TCGTTCGGGC TTTTCGGGCT CGTGGGCCTG
CAAGCACGCC TCCAGTCGTC GGAGATGGAG TCCTACCAGC GCTCGCAGGC GCTGATCCTG
CTCAACGACA TGGCCAGCCG GATCGAGATC AACCGCCGCA TGGCCTCCAG CTACGTCACC
ACTGCGCCAT TGGGCGCCGG AGCCACGTGC CCGACGGCCA CCGCCACGCG CTTGCAGGTC
GACGTCAAGG AGTGGTGCAA CGCGCTGCAG GGCGCCGCCG AAACCTCCAG CGGCACCAAG
CTTGGCGCGA TGATCGGCGG CCGCGGCTGC GTGCAGGCTC TGAGCACCAA CGAATACCTG
ATCACGGTCG CCTGGCAGGG CCTGGTGCCC ACCGCCGCGC CGCCGGAGGG CGTGCCCTGC
GGCAAGGACC TGTACGATGC GGCCGCCCCG GCCTCGGCCA GCGAACCGGC GCCGGCCTGT
TCCAGCGACA GGTGCCGAAG GACCGTGACG ACGCTGGTGC GCATCGGGAA TCTCTCATGA
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| Protein sequence | MVRRHLSAAP NGRGQRGATL LEVLVTLLIV SFGLFGLVGL QARLQSSEME SYQRSQALIL
LNDMASRIEI NRRMASSYVT TAPLGAGATC PTATATRLQV DVKEWCNALQ GAAETSSGTK
LGAMIGGRGC VQALSTNEYL ITVAWQGLVP TAAPPEGVPC GKDLYDAAAP ASASEPAPAC
SSDRCRRTVT TLVRIGNLS
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