| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2816 |
|---|
| Symbol | |
|---|
| ID | 7971029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2961652 |
|---|
| End bp | 2963985 |
|---|
| Gene Length | 2334 bp |
|---|
| Protein Length | 777 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644793401 |
|---|
| Product | heavy metal translocating P-type ATPase |
|---|
| Protein accession | YP_002944702 |
|---|
| Protein GI | 239815792 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.102701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCG CGCTCGCCTC CTTTTCCCCG GCCGCCGCGC TCCCACGGGC ACCCCGTGAA
GCCTGGCAGG TGCTCGACGA TCCCGCCGAA TGGCCCGCCT TCGGCCATGC GCTCGATGGC
GGCGATGCGG GCACGGGGCG CTGGGAATCG CAGGTGGCGG TGGAAGGCAT GCATTGCGCG
GGCTGCGGCC TCGCCGTGGA GGCCGCGCTG CTGCGCGTCG CGGGCGTGCT CGAGGTGCAG
GTGAATGCCG CGAGCCAGCG TGCCCGCGTG CTGTGGTCCG CCGCGCAGAC GCGGCCCTCG
CGCTGGTTCG AGGCTTCAGA GGCCGCCGGC TACCGGCTGG TGCCCGCCGC CGACGGCTCC
GCACGCGAGC GCCGTTCGCG CGAGTTGCGG CTCGCGCTCT GGCGCTGGCT GGTGTCGGGC
TTTTGCATGA TGCAGGTGAT GATGTACGCC TACCCGGCCT ACATCGCGCA GCCCGGGGAA
ATGACGCCGG ACGCCGCGCA GCTGCTTCGC TGGGCCTCCT GGGTGCTGAC GCTGCCGGTG
CTGTTCTTCT CCTGCGGGCC GTTCTTTCGC AGCGCGTGGC GCGACTTTCG CCATGCGCGC
ATCGGCATGG ACGTGCCGGT CGCCTTCGGC ATCGCCATTG CGTTCGCGGT CAGCACCGCG
GCCACCTTCG ACGGCGCGGG CGCATTGGGA CACGAGGTCT ATTTCGACTC GCTGACCATG
TTCGTGTTCT TCCTGCTCAC GGGCCGCTGG CTCGAGGCGC GGCTGCGCGA CCGCACGGCC
GGCTCGCTCG AGGCCGTGAT GAACCGCCTG CCCGACGGCG TCGAGCGGCT CGGGGCCGAT
GGCGGCTGGC AGCGCGTGGC AGTGCGGCGC CTGGCCGTGG GCGACGTGGT GCGGGTGCGC
CCGGGCGAGG CCTTTCCGGC CGACGGCGTG CTGATCGACG GCGGCACCAG CACCGACGAA
GCGCTGCTGA CCGGCGAATC CCGCCCGGTG GCGCGGGCGC GCGGCGAGCG CGTGCTGGCG
GGCAGCCACA ACCTGTCGGC GACCGTGCAG CTGCGCATCG AATCGGTGGG CGAGGGCACG
CGCTTCGCGC AGATCGTGCG GCTGATGGAA AGCGCCGCGC TCGGCAAGCC GCGCCTGGCC
CAACTGGCCG ACCGCCTCGC GCGGCCGTTT CTCGTGCTGG TGCTGGTGTC GGCTGCCGGC
GCCGCGGCCT TCTGGTGGCA TGCCGACCCG GGCCGCGCGC TGATGGTGGC GGTGGCGGTG
CTGATCGTGA CCTGCCCGTG CGCGCTCTCG CTCGCCACGC CGGCCGCCAT GCTTGCGAGC
GCGGGCGCGC TGGCGCGCGG CGGCGTGCTG ACCTCCAACC TGCAGGCGCT GGAGGCGCTG
GCCTCGGTCG ATACGGTGAT CTTCGACAAG ACGGGCACGC TGACCGGCGA CACGCCGCGG
CTCGAACGGG TCTACTGCCG CCAGGGTTTG CGCCCGGGCG ATGCGCTGGA GATCGGCGCC
GCGCTCGGAG CGCACTCGCT GCATCCGGGC GCGCGTGCGC TCGTGAATGC ATGGAATGCG
CAGTTCCGCG CGCCGCCCGG CTGGGAGGTG ACGCAACCGA CTGAACTGGC CGGCCTCGGG
CTCGAGGGCC TGCTGCGCCG AAGCGGCGAT GCCGGCGGCC CGGCGCGGCG CGTGCGGCTG
GGCTCGGCGA GCCATTGCAG CGTGGCGCCG CTGCAGGTCG AGGCGCCGCA GGTGCACCTG
AGCGACGAGC AGGGCTGGAT CGCGAGCTTC GTGCTGGCCG AGGAGCTGCG CCCGGACGCC
GCCGCCGCGG TGGCGGCGCT GCAGGCCGAA GGCGTCACGG TGCGCCTGCT GTCGGGCGAC
CGCGACAGCG CCGCGCGGGA GATCGCCGCG CGCGCCGGCA TCGAATTCGC GCAGGGCGGC
TGCACGCCCG AGGACAAGCT CGCGGTCCTG TGGCGGCTGC AGGCCGAAGG CCGGCAGGTG
GCGATGGTGG GCGACGGCCT GAACGACGGT CCTTCGCTGG CGCGCGCGAA TGCCTCCTTC
GCCTTCGGGC GCGCCGTGCC GCTCGCGCGC GCACGGGCCG ACTTCGTGGT GCCGGGCGAT
GCGCTCGCGG CCATTCCGCG CACCATTGCG CAGGCGCGGC GAACGCTGCG CGTGGTGCGG
CAGAACCTGG CATGGGCGGC CGGCTACAAC GCGCTGTGCG TGCCGCTGGC CGTCATGGGC
TGGCTGCCCG CGTGGCTGGC CGGGCTGGGC ATGGCGGCGA GTTCGCTGGT GGTGGTGCTC
AATGCGGCGC GGCTCGCGGC CCCCGCAGCT TCCGAGGCCA GGGCGGTGCG CTGA
|
|---|
| Protein sequence | MQAALASFSP AAALPRAPRE AWQVLDDPAE WPAFGHALDG GDAGTGRWES QVAVEGMHCA
GCGLAVEAAL LRVAGVLEVQ VNAASQRARV LWSAAQTRPS RWFEASEAAG YRLVPAADGS
ARERRSRELR LALWRWLVSG FCMMQVMMYA YPAYIAQPGE MTPDAAQLLR WASWVLTLPV
LFFSCGPFFR SAWRDFRHAR IGMDVPVAFG IAIAFAVSTA ATFDGAGALG HEVYFDSLTM
FVFFLLTGRW LEARLRDRTA GSLEAVMNRL PDGVERLGAD GGWQRVAVRR LAVGDVVRVR
PGEAFPADGV LIDGGTSTDE ALLTGESRPV ARARGERVLA GSHNLSATVQ LRIESVGEGT
RFAQIVRLME SAALGKPRLA QLADRLARPF LVLVLVSAAG AAAFWWHADP GRALMVAVAV
LIVTCPCALS LATPAAMLAS AGALARGGVL TSNLQALEAL ASVDTVIFDK TGTLTGDTPR
LERVYCRQGL RPGDALEIGA ALGAHSLHPG ARALVNAWNA QFRAPPGWEV TQPTELAGLG
LEGLLRRSGD AGGPARRVRL GSASHCSVAP LQVEAPQVHL SDEQGWIASF VLAEELRPDA
AAAVAALQAE GVTVRLLSGD RDSAAREIAA RAGIEFAQGG CTPEDKLAVL WRLQAEGRQV
AMVGDGLNDG PSLARANASF AFGRAVPLAR ARADFVVPGD ALAAIPRTIA QARRTLRVVR
QNLAWAAGYN ALCVPLAVMG WLPAWLAGLG MAASSLVVVL NAARLAAPAA SEARAVR
|
|---|
| |