Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2814 |
Symbol | |
ID | 7971027 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2960090 |
End bp | 2961082 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793399 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_002944700 |
Protein GI | 239815790 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00480171 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCCAAG ACACACCCGA AATCGCTGCC GCCATTGCCC AGCCGATGCC GCTGGAGCCC GAACTCGACG AAGCCAGGAA GGAACTGGTC GCGCTGATCA ACCGCATCAC GCGCGGCCAG GACGGCACCG TGGAAACGCC GGTGGCCGGC CTGCAGGTGT TCTGCATCAG CAAGCCCGAC GGCCCCAAGC ATGCCTTCGC AACGCCGGCG CTCGGGCTCA TCGCACAAGG CTCCAAGCGG ATCATCGTGG GCGACGACAT CTATGTGTAC GACCCGATGC ACTACCTGGT GACCTCGGTC GACCTGCCGG TGTGCGGCCA GGTGCGCCTG ACGAGCGACA ACGAGCCGTA CCTGGGCGTG CGGCTGGAGC TGGCAATCGA CGAGATCGGC AAGCTCATCG GCGACGAGAA GCTGCCCGCG AAGGCCAATG CGCCTGCTTC CCGCGGCATG TACGTCAACC GCATCGGCAT GCCGGTGCTG GAGCCGGTGC TGCGGCTGCT GCGGCTGGTC GAGTCGCCCG AGGACGTGCC GATCATGGCG CCGCTCATCA AGCGCGAGAT CATGTACCGC CTGCTGGTGA ACGGGGAGGG CGCGCGGCTG CGGCAGATCG CGCTGCAGGA CAGCCACACC CAGCGCATTG CCAAGGCGAT CAGCGCGCTG CGCATCAACT ATTCGCAGTC GCTGCGGATC GAGGACATGG CGCGCGCGGT GCACATGAGC GTGTCGTCGT TCCACCATCA CTTCAAGGCC GTGACGGCCA TGAGCCCGCT GCAGTACCAG AAGCAGCTGC GGCTGCAGGA AGCGCGCCGC CAGATGCTGA TGGCCGGCGC CGACGTGTCG AGTGCGGCGC ACAGCGTGGG CTACGAGAGC CCGTCGCAGT TCGCGCGCGA GTACAGCCGC ATGTTCGGCG CGCCGCCGCT GCGCGACAAG CGCCGCTGGC TCAGCGACGC CGAGAACGAC GCGCTCGGTG CGGGCTCGAT GCAGGCCGCC TGA
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Protein sequence | MPQDTPEIAA AIAQPMPLEP ELDEARKELV ALINRITRGQ DGTVETPVAG LQVFCISKPD GPKHAFATPA LGLIAQGSKR IIVGDDIYVY DPMHYLVTSV DLPVCGQVRL TSDNEPYLGV RLELAIDEIG KLIGDEKLPA KANAPASRGM YVNRIGMPVL EPVLRLLRLV ESPEDVPIMA PLIKREIMYR LLVNGEGARL RQIALQDSHT QRIAKAISAL RINYSQSLRI EDMARAVHMS VSSFHHHFKA VTAMSPLQYQ KQLRLQEARR QMLMAGADVS SAAHSVGYES PSQFAREYSR MFGAPPLRDK RRWLSDAEND ALGAGSMQAA
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