Gene Vapar_2812 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2812 
Symbol 
ID7971025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2958019 
End bp2958819 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content74% 
IMG OID644793397 
Productdethiobiotin synthase 
Protein accessionYP_002944698 
Protein GI239815788 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0132] Dethiobiotin synthetase 
TIGRFAM ID[TIGR00347] dethiobiotin synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00660538 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCCG CGCCGGGTGC GCCGATGACC CGCCGCCGCT GGTTCGTCAC CGGCACCGAC 
ACGGGCGTCG GCAAGACGCT GGCCAGCAGC GCGATGCTGG GCCTGCTGGC CGCATCGGGC
CTGCGGGCAG TCGGCATGAA GCCGGTGGCC GCGGGCCTGG AACGGATCGA TGGCGCCTGG
CGCAACGATG ACGTCGAGCA GCTGCGCGCG GCCGGCAATG TCGATGCGCC GCTGGCCCTG
CGCTGCCCGT ACTTGCTGCG CGCGCCGATG TCGCCGCACC TGGCGGCACG GGAGGAGGGC
GTGCGCATCG AATTGCCGCC GCTGCTGTCG GCCTTCGCGG CGTTGTCGCA GCAGGCCGAC
GCGGTGGTGG TCGAAGGCGT GGGCGGCTTC TGCGTGCCGT TCGGCGACGA CCTCGACAGC
GCCGAGCTGG CCGTGGCGCT GGGACTGCCG GTGATCCTGG TGGTCGGGCT GCGCCTCGGT
TGCCTGAACC ACGCGCTGCT CACGGCGGAA GCGATCCGCG CGCGCGGGCT CATGCTGGCA
GGATGGATCG CGAGCACCAT CGAGCCGGAG ATGCTGGCGC CCGAAGCCAA TCTCCAGACG
CTGCGCGGCC GGCTCGGTGC GCCGCTGCTC GGTGTGGTGC CGCACCTGGC GGAACCCTCG
GCGGCCAGCG CCGCGCGGCA CCTCGACCTG CGCGCATTGC GCGCCACCGC GGCCTACGCC
GCGCACCGGT CGGCGACGCC GGCCGAGCTC AGCCCCTCAG CGGCGCTGGC CGGCTTCAGC
CACTCAGCCG CGCTGGCCTG A
 
Protein sequence
MSAAPGAPMT RRRWFVTGTD TGVGKTLASS AMLGLLAASG LRAVGMKPVA AGLERIDGAW 
RNDDVEQLRA AGNVDAPLAL RCPYLLRAPM SPHLAAREEG VRIELPPLLS AFAALSQQAD
AVVVEGVGGF CVPFGDDLDS AELAVALGLP VILVVGLRLG CLNHALLTAE AIRARGLMLA
GWIASTIEPE MLAPEANLQT LRGRLGAPLL GVVPHLAEPS AASAARHLDL RALRATAAYA
AHRSATPAEL SPSAALAGFS HSAALA