| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2799 |
|---|
| Symbol | |
|---|
| ID | 7971012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2942939 |
|---|
| End bp | 2943886 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644793385 |
|---|
| Product | putative adenylate/guanylate cyclase |
|---|
| Protein accession | YP_002944686 |
|---|
| Protein GI | 239815776 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2114] Adenylate cyclase, family 3 (some proteins contain HAMP domain) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.431551 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCA ATTCCACAGT CGTATTCGCA GACCTCACCG GAAGCTCCAG GGTTTTCGAA
GCCATGGGAA ATGCGCGCGC CACCGACACG GTGACGCGGC TGACCCAATG GATCGGCGGC
GTCTGCCAGG CACACGGCGG CAGGGTCGTG AAGTCGCTCG GCGATGGCGT GTTCGCCCTT
TTTTCGAACG CGGCCACCGC CATGCAGGCC GTGATCGAAC TGCAGCGCTA TCACCAGAAG
CGCCTCATGA CCTGGCCCGT GCCGCTGCGC ATGGCGCTGC AGATCGGCGT GGCAAGCGGC
GAGGTGGTCG AGGTCGAGGG CGACTGCTTC GGCGATGCGG TCAACCTGGC GTCGCGCCTG
AGCGACCTGG CGGGGCCGGG CCAGATCTGG GCCACCGATG CAACCATTGC GCAGTTGGGC
GAGACGGCTG TGCGGCACCG CGACCTGGGG CTCATCACCA TTCGCGGGCG CAGCGAGATG
TCGGCCGTCC ACCGCATCGA CTGGCAGGAG GAGATGACCT CGTTCCTCAC GCTGCCGGCC
GCGCTGACGC CGCTGCGGCT GCCCGATTCA TCGCTGGGGC AGATCGAACT GGCGTGGCTG
GACGTGCGGT CCACCTTCCG CACCGAAGAG CTGCCGATCC ACCTCGGGCG CGTGAGCGAT
GCGCAGTTCG TGGTCAACGA TCCGCGGGTC TCCCGGCTGC ATGCGCGCAT CGAGCTGCGG
CATGGCAGCT GCGTGCTGAC CGACCTGAGC ACCTACGGCA CCTGGGTCCG GTTTCATGGC
AACGGCGGAC CGAGCCAGGA AGTGGCGCTC AGGCGCGAGG AATGCGTGCT GCACGGACGC
GGCGAAATCG GCCTGGGCGC GCCGCTGAGC GATTTCACCG CGCCGACCAT CGCCTTCAAC
ACCACCGGCG CCGAGGTTCA GCTTTCGCGC CGCGAAATCA CGGGCTGA
|
|---|
| Protein sequence | MDVNSTVVFA DLTGSSRVFE AMGNARATDT VTRLTQWIGG VCQAHGGRVV KSLGDGVFAL
FSNAATAMQA VIELQRYHQK RLMTWPVPLR MALQIGVASG EVVEVEGDCF GDAVNLASRL
SDLAGPGQIW ATDATIAQLG ETAVRHRDLG LITIRGRSEM SAVHRIDWQE EMTSFLTLPA
ALTPLRLPDS SLGQIELAWL DVRSTFRTEE LPIHLGRVSD AQFVVNDPRV SRLHARIELR
HGSCVLTDLS TYGTWVRFHG NGGPSQEVAL RREECVLHGR GEIGLGAPLS DFTAPTIAFN
TTGAEVQLSR REITG
|
|---|
| |