Gene Vapar_2793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2793 
Symbol 
ID7971006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2938753 
End bp2939451 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content72% 
IMG OID644793379 
ProductAnkyrin 
Protein accessionYP_002944680 
Protein GI239815770 
COG category[R] General function prediction only 
COG ID[COG0666] FOG: Ankyrin repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.176695 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAGC ACGGCATCGG GTCCGGGCTG CTGGCGGTTG CGCTTGGACT GGGCGCATCG 
GCCGGCGTGT CGGCCCAGGT GCCGCCGCAG GCTGCCGAGC TGCTGGCCTA TGAAGGACTG
CACCGGGCGG CCTGGCAGGG CGACCTGGTC AAGCTGAAGG GCTTGATCGC CTCGGGCGCC
AATCTGGATG CGCGCGATGC GCGGGGCCGC ACGCCCTTGC ACGTCGCCAC CCATGCACGG
CAGCGCGAGG CGGTGAAGCT GCTTGCCAAG GCCGGCGCGA ACCTCGACCT GCTCGACGAC
GACCGCTACG ACGCCGTCAC CATCGCCGCG GTGGCCGACG ATGCCGCGAC GCTTGCGCTG
CTGCTGTCGC TCGGCGCGAA GGCCGGGCAG GTGACCAGCC GCTACGACGG CACCGCGCTC
ATTGCCGCGG CGCACCTGGG CCATGACGAA GTGGTGCGCC AGCTGATCGC GGCCGGCGCG
CCGCTCGACC ACGTCAACAA CCTGCATTGG ACCGCGGTGA TCGAATCGAT CGTGCTGGGC
GACGGCGGCC CGCGCCACCA GCGCACGCTG GCCGCGCTGG TCGACGCCGG CGCCAGCCTT
GCGCTGGCCG ACCGGCAGGG CAACACGCCG CTGCAGCTGG CGCGGGCCCG CGGCTACACG
GCCATGGTGA AGCTGCTGGA AGCGCCGCGC GCAAGATAG
 
Protein sequence
MMKHGIGSGL LAVALGLGAS AGVSAQVPPQ AAELLAYEGL HRAAWQGDLV KLKGLIASGA 
NLDARDARGR TPLHVATHAR QREAVKLLAK AGANLDLLDD DRYDAVTIAA VADDAATLAL
LLSLGAKAGQ VTSRYDGTAL IAAAHLGHDE VVRQLIAAGA PLDHVNNLHW TAVIESIVLG
DGGPRHQRTL AALVDAGASL ALADRQGNTP LQLARARGYT AMVKLLEAPR AR