| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2790 |
|---|
| Symbol | |
|---|
| ID | 7971003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2935975 |
|---|
| End bp | 2937474 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644793376 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_002944677 |
|---|
| Protein GI | 239815767 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.12989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGT GGTTGCGCAC GCAGGGTGGC TGGTGGCTGG CATGGCTGGC CCTCACGGCC
GTGGGCGCGG TGTGGCTCGC GCGCGCCGAA CTCGCGCAGC TGCAGCAGGA TTTCGAGACC
GACGCGCGCA TCGCGCACCG GCTCATGAGC CAGCAGGTGG TGCAGTACGA CGCGGTGCTG
GCCACGCTCG CGCTGCTCGA ACCCGGCGAC GGCGCGGACC GCCCGGAGCA GCGCCTGCCA
TCGGTCTATC CGTCGATCCT GCGCGTGCAG CGGCGCGAAC GCGACCAGGC CTGGCCCGAC
GAGAAGCAGG CCGGCACCTT GGCCGCTGCG GAAGCGCGCT CGCGCAGCGA GCGCCGCGCC
GAACTGGCGG GGCTGGACCT CGCGCAGGGC CGCTACGAGC TCGTGATGGG CGCGACGCCC
GTCAGCTACG CGCTCGAGAT CGACCTGGCC GGCTCGGTGC CGTGGCGCGA CTGGCCGATG
GACCCGAAGC AAAGCCCGGT GCGCGTGAGC CTGCAGCGCG GCGCGCAGCA GTTCGTGCTG
CAGCCGGGGC GGACGGCGCA ATCGGACGCG GGCGGCTGGC GCTTCAGCCT CACCAAGCCC
CTGGCCTCGC CGAGCCAGCC TTTCGACCTG GTGGCCGAGC GCCATGTGGG CTGGGGTGAA
CTGCCGTGGC GCGGCATCGC CGGCTGGGGC GTGGCGGCGG CGCTGCTGCT GGCCGGCCTG
TGGACCGCGC AGCGCCAGCG CATCGCGCGG CGCCGGGCCG AGGAGCTGCT GCGTCTCGGC
CAGGTGGCGC GGCTCAATGC CCTGGGCGAG CTTTCGGCAG GGCTGGCGCA CGAACTGAAC
CAGCCGCTCA CGGCCGTGCT GGCCAATGCG CAGGCCGCGC GCCGGCTGCT CGACGAAGAT
CCGCCCGACC TGGCGACGGC GCGCAATGCC ATGGGCCAGG CCGTGGAGCA GGCGCGCCGC
GCGGCCGGCG TGGTCGGCCG GCTGCGCCGC GTCATCGAAC GCCCTGAAGC CGGCGGCGAC
GTGAAGCCGC TGGTGCTGCA GGAGGTGGTG CGCAGCGCCA TGCACCTGCT GGCACCCGAG
TTCGCGCAGC GCGGCGTGGC GGCGCAGTTC GACGCCTCCG CGCAGGCACC GGTGCGCGTG
CAGGCCGAGG CGGTGGCGCT CGAGCAGATC GTGCACAACC TGCTGATGAA CGCCTTGCAG
GCGCTCGACC TCGTGCCCGC GTCCGAACGC CGCCTTTCCG TTTCGGTCGG CCGCAATGGG
CAGGAGGGCG TGCTGACCGT GACCGACAAC GGACGCGGCA TTGCACCCGA GGCCATGCCG
CGCCTCTTCG AGCCTTTCTT CAGCACGCGC GAGGGCGGCC TGGGCCTTGG CCTGAGCCTC
AGCGAAACGC TGGCGAGCGG CATGGGCGGC AGCCTCTCCG CGGCCAATGC GGCGCCGCGC
GGCGCGCGCT TCACGCTGCT GCTGCCGTTG GTGGCGGCGT CCACGGAGCG CATGGCATGA
|
|---|
| Protein sequence | MKQWLRTQGG WWLAWLALTA VGAVWLARAE LAQLQQDFET DARIAHRLMS QQVVQYDAVL
ATLALLEPGD GADRPEQRLP SVYPSILRVQ RRERDQAWPD EKQAGTLAAA EARSRSERRA
ELAGLDLAQG RYELVMGATP VSYALEIDLA GSVPWRDWPM DPKQSPVRVS LQRGAQQFVL
QPGRTAQSDA GGWRFSLTKP LASPSQPFDL VAERHVGWGE LPWRGIAGWG VAAALLLAGL
WTAQRQRIAR RRAEELLRLG QVARLNALGE LSAGLAHELN QPLTAVLANA QAARRLLDED
PPDLATARNA MGQAVEQARR AAGVVGRLRR VIERPEAGGD VKPLVLQEVV RSAMHLLAPE
FAQRGVAAQF DASAQAPVRV QAEAVALEQI VHNLLMNALQ ALDLVPASER RLSVSVGRNG
QEGVLTVTDN GRGIAPEAMP RLFEPFFSTR EGGLGLGLSL SETLASGMGG SLSAANAAPR
GARFTLLLPL VAASTERMA
|
|---|
| |