| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2772 |
|---|
| Symbol | |
|---|
| ID | 7970985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2919455 |
|---|
| End bp | 2920654 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644793359 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_002944660 |
|---|
| Protein GI | 239815750 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.350013 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCACTCG AACACATCAC CGTGCTGGAC CTGACGCACA TGCTGTCCGG CCCCTACGGC
ACCATGCTGC TGGCCGACCT CGGCGCGCGC ACCATCAAGG TCGAGCCGCC CGGCAGCGGC
GAAGGCACCC GCCGCCTGCT GGAGAACGAC CCGCACTATT CGCGCGACGG CATGGGGGCG
TACTACCTCA CGCTCAACCG CAACAAGGAG AGCGTGTGCG TCGACCTCAA GACGCCGGCC
GGCAAGGCGG TGTTTCTCGA TCTCGTGCGC AAGGCCGACG TGGTGTTCGA CAACTTCAGC
GTCGGCGTGA CCGGGCGGCT CGGTATCGAC TACGCCTCGC TTGCCAAGGT GAACCCGCGC
ATCGTCACCT GCTCGGTCAC CGGCTTCGGC CAGACCGGCC CGCAGACGCA GCGCCCGGCC
TTCGACCAGG TGGTGCAGGC GATGGGCGGC GGCATGTCGA TCACCGGCAC GCCCGAGACG
GGCCCGACGC GCAGCGGCAT CCCCATTGGC GACCTCGGCG GCGGCATGTT CGGCGCGATG
GGCGTACTGG CTGCGCTGGT GGAGCGCGAC CGGACCGGCG TGGGCCAGCA CGTCGACATT
TCGATGCTCG ACGCGCAGAT CTCGCTGCTC AACTACATGG CGACGATGCA TCTGCTGTCG
GGCCATGTGC CCGAAGGCAT TGGCAACGGG CATTTCGTGC ATGTGCCGTA CAACAGCTAC
CCGACGGCCG ACGGCCACGT GATCATCGCG TGCATCGGCG ACCCGTTCTT CGATCGCTTC
GTCGAGTTCA TCGACCTGCC GGCGCTGCGC AAGCCCGAGT ACCGCCAGCA GCCGGTGCGC
TTCGCGGCCA AGGCCGAGAT CGACGCGGTG GTCGGCGAAG CGATGCGCAA GCAGCCGACC
GCCCATTGGC TCGAGCGTCT GCGCGAGGCG CGCATTCCGT GCGGCCCGGT CAACAACTTC
GAGCAGGCGC TGAGCGATGC ACAGGTGCTG GCGCGCGACA TGGTGGTCGA GGTGCCGCTG
AAGACCGGCG AACGCGTGCG CATGCCGGGC AACCCCATCA AGCTGTCGGC GGCCGACAAG
GGCAGGGCGT TCACCTGCCC GCCGGCGCTC GGCGAAAACA CGCGCCAGGT GCTCGGCGAC
CTCGTCGGCT ACGCACCCGA CAAGCTCGAG GCGCTGCGCG CCGAAGGAGC GATTGCATGA
|
|---|
| Protein sequence | MALEHITVLD LTHMLSGPYG TMLLADLGAR TIKVEPPGSG EGTRRLLEND PHYSRDGMGA
YYLTLNRNKE SVCVDLKTPA GKAVFLDLVR KADVVFDNFS VGVTGRLGID YASLAKVNPR
IVTCSVTGFG QTGPQTQRPA FDQVVQAMGG GMSITGTPET GPTRSGIPIG DLGGGMFGAM
GVLAALVERD RTGVGQHVDI SMLDAQISLL NYMATMHLLS GHVPEGIGNG HFVHVPYNSY
PTADGHVIIA CIGDPFFDRF VEFIDLPALR KPEYRQQPVR FAAKAEIDAV VGEAMRKQPT
AHWLERLREA RIPCGPVNNF EQALSDAQVL ARDMVVEVPL KTGERVRMPG NPIKLSAADK
GRAFTCPPAL GENTRQVLGD LVGYAPDKLE ALRAEGAIA
|
|---|
| |