| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2771 |
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| Symbol | |
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| ID | 7970984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2917326 |
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| End bp | 2919305 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793358 |
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| Product | proprionate catabolism activator, Fis family |
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| Protein accession | YP_002944659 |
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| Protein GI | 239815749 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0968139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCAAT GCGACATGCC CAGCGATCGC CCCTCCTCCC ACTTCTTCCC GGCTCCCGTA
CGCAGCGGCG AGCTGCCACG CCTGTGCTTC CTGAGCTACC GGCAGATCCG CGGATTCGCG
ATGCCGGTGG TGGCGGAATA CACCGGCCGC GCCGAGATCG AGGTGGTCGA CGGCACCTTC
GGCGACGCAC TCGCCATCGC GCGCGACCGC CTCGAGCGCG GCCTCGTCGA CGCCTTCGTG
AGCGCGGGCT CGAACGCGAG CATCCTGCGC GCCGGACTGC AGGCGCCGGT CGGCACCATC
CAGCTGAGCG GCTTCGACCT GCTGCAGGCG CTCATCAAGG CGCGGCGCAT GTCCAGCCGC
GTCGGCGTCG TCATGTACGG CCAGACCATC CCCGAACTCG ACGAAGTGAA GGACCTGCTC
AACATCGAGG TGGTGCAGCA CGCCTACCAG ACGCCCGACG ACGCGCGCCA GCGCTTCGAG
CAGCTGCGGC GCGAGGGCTT CGAGGTGATC GTCGGCTCCA GCCTGGTCGT CGAGCTCGCG
GAGCAAGCCG GCCTGCACGG GCTGCTCGCC TACTCGCTGG GCAGCGTGCG CAAGGGCTTC
GAGGACGCGC TCGAACTCGC GCGCGTCGCG CGGCTCGAAG CCGGCCGCTA CGAGCAGCTC
AACGGCGTGC TGCACAACCT GCAGGAGGCC GTGCTGGCGG TGAACCGCGA CAACCGCGTG
ATCGCGGTCA ACCCGCCGAT GCAGCAGCTG CTCGGCCCGC CGCACGCGCG GCTCATCGGC
CAGTCGCTGG AGGCGATCGA ACCCGAGCTG TCGCTGCAGC CCACGCTCGA CAGCGGGCAG
GTCGAGCGCG CCGTGGTGCA GCGCTTTGCG CAGCGCGACT GGGTGGTCAA CCGCACGCCG
ATCCGAGAAC ACGGCGAGAT CGTCGGCGCG GCCCTCACGC TCTACGACGC TCGCACCATC
CAGGAAGCCG ACACCAGCCT GCGCATCCAG CAGGGCCGGC GCCAGAGCGC GGCGCGCCAC
CGCTTCGCCA ACCTCATCGG CCAGAGCCCG GCCTTCTTGC GCGCGGTGCA GACCGCGCGG
CGTTTTGCGC GTACCGACCT CACGGTGCTG ATCGCCGGCG AGAGCGGCGT CGGCAAGGAG
CTGTTCGCGC AGTCCATCCA CAACGAGAGC GTGCGCGCGG GACGGCCCTT CGTCGCCGTC
AACTGCGCGG CCTTTCCGGA GGCGCTGCTG GAAAGCGAGC TGTTCGGCTA CGAGGAAGGC
GCCTTCACCG GCTCACGCCG CGGCGGCAAG CGCGGCCTGT TCGAGGCGGC GCACACGGGC
ACCCTCTTTC TCGACGAGAT CGGCGACATG CCGCTGCAAC TGCAGACGCG ACTGCTGCGC
GTGTTGCAGG AGCGCGAGAT CACGCGGCTC GGCGCGACGG CCGCCATTCC GGTCGATGTG
CGCGTGATCG CCGCCACGCA CCAGCCGCTG AACGACATGA TTGCCGAGCG CCGCTTCCGG
CAAGACCTGT TCTACCGCCT CAACACGCTG CGCCTGCCGC TGCCGCCCTT GCGCGAGCGG
CGCGAAGACA TCGCGCCGCT GGCCGAAGCG CAGGTCGGGC GCTGCCTGCA GCGGCTGGGC
ACGCGGCTGG ACCCGGTGCG CGCGCTGGCG CCGCTGCTGC CGCGCCTGCG CGCCTACGAC
TGGCCCGGCA ACATCCGCGA GCTGGAAAAC CTCGGCGAGC GCATCGCGGT GTTCCTCATG
CAGTTCGACC ACCTCGAAGA CGTCCGCTAC GACGAACTGC GGCACGACCT GCCGGAGCTT
TTCGCCGATA CAGCCGCAAG CGAGGTGGCC GACGACACTG GGCTGAGCGC TGCACGCGTG
GCCGCGGCGC TGCAGGCGCA AGGCGGCAAC CGCCAGGCCG CGGCCCGGCA ACTCGGCGTG
AGCCGCTCGA CGCTTTGGCG CTGGATGCGC GAACGCGGCG CCGATGCACC GGGCAGCTGA
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| Protein sequence | MFQCDMPSDR PSSHFFPAPV RSGELPRLCF LSYRQIRGFA MPVVAEYTGR AEIEVVDGTF
GDALAIARDR LERGLVDAFV SAGSNASILR AGLQAPVGTI QLSGFDLLQA LIKARRMSSR
VGVVMYGQTI PELDEVKDLL NIEVVQHAYQ TPDDARQRFE QLRREGFEVI VGSSLVVELA
EQAGLHGLLA YSLGSVRKGF EDALELARVA RLEAGRYEQL NGVLHNLQEA VLAVNRDNRV
IAVNPPMQQL LGPPHARLIG QSLEAIEPEL SLQPTLDSGQ VERAVVQRFA QRDWVVNRTP
IREHGEIVGA ALTLYDARTI QEADTSLRIQ QGRRQSAARH RFANLIGQSP AFLRAVQTAR
RFARTDLTVL IAGESGVGKE LFAQSIHNES VRAGRPFVAV NCAAFPEALL ESELFGYEEG
AFTGSRRGGK RGLFEAAHTG TLFLDEIGDM PLQLQTRLLR VLQEREITRL GATAAIPVDV
RVIAATHQPL NDMIAERRFR QDLFYRLNTL RLPLPPLRER REDIAPLAEA QVGRCLQRLG
TRLDPVRALA PLLPRLRAYD WPGNIRELEN LGERIAVFLM QFDHLEDVRY DELRHDLPEL
FADTAASEVA DDTGLSAARV AAALQAQGGN RQAAARQLGV SRSTLWRWMR ERGADAPGS
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