| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2754 |
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| Symbol | |
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| ID | 7970967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2904988 |
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| End bp | 2905803 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793341 |
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| Product | putative transmembrane anti-sigma factor |
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| Protein accession | YP_002944642 |
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| Protein GI | 239815732 |
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| COG category | [K] Transcription |
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| COG ID | [COG5662] Predicted transmembrane transcriptional regulator (anti-sigma factor) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGCC CTGCCCCGCC CCCCACCGAC GACGAGTTGC ATGCGCTCAT CGATGGCCAG
TTGGCACCGG AACGCCGCAC CGAGCTCGAG GACGCCGTCG CGCACGATCC GGCCCTTGCG
GCGCGGGTGG CGGCCTGGCG CACCCAGCGC GACGCACTGC GCCGGCTGCA TGGAGAGCTG
CTGGTAGAGC CCGTGCCCGC GCCCCTGATG AACGCGCTCG ATCGCAGCCA GGCCCGGCGA
GGCCATTGGA TGCGATGGGG CGGCATGGCG GCCGGCGTGC TGATCGCCTT TGCCGCCGGC
TGGCTCGGCA ATGCCCAGTG GTCGATGCAG CGCGCCGCTT CGGCCCAGTT GGCCAGGGCG
CCTGCGATGC GCGAATTCGT GCACGACGCG TCCATTGCCC ACGCCGTCTA TGCGCCGGAA
AAAAGGCACC CGGTCGAGGT GGCTGCCAGC GAGCAGCAGC ACCTCGTGCA GTGGCTGTCC
AAGCGCCTGG ACAGGCCGCT CAAGGTGCCG GACCTGACCG CCATGGGCTA CACGCTCGTC
GGCGGCCGCC TCTTGCCCGG GGAAAGCGGC GCGCGCGCCC AGTTCATGTT CGAGGACGCC
GCCGGCGAAC GCATCACGCT CTACATCGGC ACCCTCGACA GCCAGGCCGC CGCCGGCACC
GCCGCATCGC GCGAAACAGC CTTCCGTTTC GCGTCCGAAG GACCGGTGCC CAGCTTCTAT
TGGATCGACC AGGGCTTCGG CTATGCCGTT GCCGGCAAGC TACCGCGTGA AGTTTTGCTG
AAACTCGCGA CGCTCGCCTA CCGCGATTTG TCGTGA
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| Protein sequence | MNRPAPPPTD DELHALIDGQ LAPERRTELE DAVAHDPALA ARVAAWRTQR DALRRLHGEL
LVEPVPAPLM NALDRSQARR GHWMRWGGMA AGVLIAFAAG WLGNAQWSMQ RAASAQLARA
PAMREFVHDA SIAHAVYAPE KRHPVEVAAS EQQHLVQWLS KRLDRPLKVP DLTAMGYTLV
GGRLLPGESG ARAQFMFEDA AGERITLYIG TLDSQAAAGT AASRETAFRF ASEGPVPSFY
WIDQGFGYAV AGKLPREVLL KLATLAYRDL S
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