| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2748 |
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| Symbol | |
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| ID | 7972349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2897353 |
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| End bp | 2900307 |
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| Gene Length | 2955 bp |
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| Protein Length | 984 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793335 |
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| Product | translation initiation factor IF-2 |
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| Protein accession | YP_002944636 |
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| Protein GI | 239815726 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAGTA CCACTGTCGC CGAGTTCGCG AACGAGCTCA AGAAGACTCC CGAAACCTTG
CTTGACCAGC TCAAGAGCGC AGGCGTGCCC AAGGCGGCAC CCACCGATGC ACTCACCGAG
GCTGACAAGC AGCGCCTGCT CGGCTTTCTC AAAGCCAGCC ATGGCACCGC CGAGCCCGAG
CGCAAGAAGA TCACGCTGAC GAAAAAGTCG ACCAGCGAGA TCAAGCAGGC CGACGCCACC
GGCCGCGCCC GCACCATCCA GGTCGAGGTG CGCAAGAAGC GCACCTTCAT CCAGCGCGAC
GACGGCCACC CGGCCACGCC CGAAGTGCAA CCGGTGGCCG AAGCGCCCGC CGCGGCGCCC
GCCGCACCCC GCATCGACGA AGCCGAACTG GCCCGCCGCG AGGAAGAGGC GCGCCGCCAG
GCCGAGCTGA TCCGCCGCCA GGAAGAAGAA CTGGCCGAGA AGCGCCGCCT GCGCGAAGAA
GCCGAAGCCC GCGAACGCGA ACAGGCCGAG AAGGCCGAGC GTGCAGAGCA GGCCGAGCAG
GAAGCTGCGC GCATCGCTGC AGAGAAGAAG GCCGCTGACG CAGCCGCGGC CGCGCCCGCC
AAGGAAGCGG CCAAGCCGGC TGCTGCGCCT GTTGCAGCCG CTGCAGCCGC CGCCGAACAG
CAGGCCGCCG ACACCAAGCT GGCTGCCCAG ACCGCCGCCA CGCAAGCCAA GGAAGACGCC
AAGGCCAAGG CCGCCGCCGA ATCGAAGGCC CGTGCCGACG AGGAAGCCGC CCGCGCCAAG
GACCTGGACG AGCGCCGCCG CAAGGCCCTG GCCGAAGCCG AAGCCATCCG CGCCATGATG
AACGCACCGG CCCGCGTGCT GGTGCCGCAC AAGGCGCCCG AGAAGCCGCA GCCCGAAAAG
GCTGCGGTCA AGGGCACGCT GCACAAGCCG GCCGCGCCCG CAGCGCGCCC CGGCGCGCCG
GCCGCACCGG GTGCTGCCGC AGCCCCCGGC GCCGCCGGTG CCGGCAAGGA AGTCAAGTCG
GCCAAGCTCT CGTCGAGCTG GGCGGGCGAT CCTGCCAAGA AGAAGGAAAT CAAGACCCGC
GGCGATGCCA GCGGCGGTGT CGGCCGCGGC AACTGGCGCG GAGGCCCGCG CGGCCGCCGT
GGCAGCAATG ACCGTGGAGG CCACGAAGAG CACGTGCAGG CCGCACCGGT GGAGGCGCGC
ATTCTCGAAG TGCACGTGCC CGAAACCATC ACGGTGGCCG AGCTCGCGCA CAAGATGGCC
GTCAAGGCAC AGGAAGTCAT CAAGCAATTG ATGAAGCTGG GCCAGATGGC GACCATCAAC
CAGTCGCTGG ACCAGGACAC CGCCATGATC CTGGTGGAGG AAATGGGCCA CAACGCGGTC
GTTGCCGCGC TGGACGACCC TGAAGCCTTC ACCGACGAGG ACGTGTCGGC GCAAACCGCC
GAAGCCCTGC CGCGCGCACC GGTCGTGACC GTCATGGGCC ACGTCGACCA CGGCAAGACC
TCGCTGCTCG ACTACATCCG CCGCGCCAAG GTTGCAGCGG GCGAAGCCGG CGGCATCACG
CAGCACATCG GTGCCTACCA TGTGCAGACC GAACGCGGCA TGGTGTCCTT CCTCGACACC
CCGGGCCACG AGGCCTTCAC GGCCATGCGT GCCCGCGGTG CGCAGGCCAC CGACATCGTC
ATCCTCGTGG TGGCGGCCGA CGACGGCGTC ATGCCGCAGA CCAAGGAAGC CATCAAGCAC
GCGAAGGCTG CGGGTGTGCC GATCGTGGTT GCCATCAACA AGATCGACAA GCCCGATGCC
AGCCCGGACC GCGTGAAGCA GGAACTGGTG GCCGAAGAGG TGGTGCCCGA AGAGTACGGC
GGCGACGTGC CGTTCGTGCC GGTGTCCGCC AAGACGGGCC AGGGCATCGA CGACCTGCTC
GAGCAGGTGC TGCTGCAGGC CGAAGTGCTG GAACTCAAGG CGCCGGTGGA TGCCGCCGCC
AAGGGCCTGG TCATCGAAGC GCAGCTCGAC AAGGGCCGCG GCCCGGTCGC GACCGTGCTG
GTGCAGTCCG GCACGCTCAA GACCGGCGAC GTGGTGCTGG CAGGTTCGAC CTATGGCCGC
GTGCGCGCCA TGCTCGACGA AGACGGCAGG ACCATCAAGT CGGCCGGCCC GTCGATCCCG
GTCGAGATCC AGGGCCTGAC CGAAGTGCCC CAGGCGGGCG ACGAGTTCAT GGTGATGAGC
GACGAGCGCC GTGCGCGCGA AATCGCCACC TACCGTGCCG GCAAGTTCCG CAACACCAAG
CTGGCGAAGG CCCAGGCCGC GAACCTGCAG AACATGTTCA CCGACCTCTC GGCCGGCGAA
GTGCAGACGC TGCGCATCAT CATCAAGGCC GACGTGCAGG GCTCGCAGGA AGCGCTGGCC
CAGTCGCTGC TCAAGCTGGC GACCGACGAG GTCAAGGTGC AGATCGTGTA CGCCGGCGTG
GGCGGCATCA GCGAAAGCGA CATCAACCTG GCGATCGCCT CCAAGGCCAT CGTGATCGGC
TTCAACGTGC GTGCCGATGC CGGCGCGCGC AAGCTGGCCG AAGGCAATGG CGTGCAGCTG
AACTACTACA GCATCATTTA CGACGCCGTG GACGAGATCA AGGTCGCGAT GTCGGGCATG
CTGGCACCGG AGCGCCGCGA GGAAATCATC GGCTCGGCCG AGATCCGCAC GGTGTTCGTG
GCCTCGAAGA TCGGTACGGT CGCGGGTTCC TACATCACCT CGGGCTCGGT CAACCGCAGT
GCGCATTTCC GCCTGCTGCG CGACAACGTG GTGATCTACA CCGGCGAAGT CGACTCGATC
AAGCGCATGA AGGACGACGT CCGCGAAGTG CGCGAAGGCT TCGAGTGCGG TATCAAGCTC
AAGAACTACA ACGACATCAA AGAGGGCGAT CAGCTCGAGT TCTTTGAAAT CAAGGAGATC
GCCCGTACGC TGTAA
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| Protein sequence | MSSTTVAEFA NELKKTPETL LDQLKSAGVP KAAPTDALTE ADKQRLLGFL KASHGTAEPE
RKKITLTKKS TSEIKQADAT GRARTIQVEV RKKRTFIQRD DGHPATPEVQ PVAEAPAAAP
AAPRIDEAEL ARREEEARRQ AELIRRQEEE LAEKRRLREE AEAREREQAE KAERAEQAEQ
EAARIAAEKK AADAAAAAPA KEAAKPAAAP VAAAAAAAEQ QAADTKLAAQ TAATQAKEDA
KAKAAAESKA RADEEAARAK DLDERRRKAL AEAEAIRAMM NAPARVLVPH KAPEKPQPEK
AAVKGTLHKP AAPAARPGAP AAPGAAAAPG AAGAGKEVKS AKLSSSWAGD PAKKKEIKTR
GDASGGVGRG NWRGGPRGRR GSNDRGGHEE HVQAAPVEAR ILEVHVPETI TVAELAHKMA
VKAQEVIKQL MKLGQMATIN QSLDQDTAMI LVEEMGHNAV VAALDDPEAF TDEDVSAQTA
EALPRAPVVT VMGHVDHGKT SLLDYIRRAK VAAGEAGGIT QHIGAYHVQT ERGMVSFLDT
PGHEAFTAMR ARGAQATDIV ILVVAADDGV MPQTKEAIKH AKAAGVPIVV AINKIDKPDA
SPDRVKQELV AEEVVPEEYG GDVPFVPVSA KTGQGIDDLL EQVLLQAEVL ELKAPVDAAA
KGLVIEAQLD KGRGPVATVL VQSGTLKTGD VVLAGSTYGR VRAMLDEDGR TIKSAGPSIP
VEIQGLTEVP QAGDEFMVMS DERRAREIAT YRAGKFRNTK LAKAQAANLQ NMFTDLSAGE
VQTLRIIIKA DVQGSQEALA QSLLKLATDE VKVQIVYAGV GGISESDINL AIASKAIVIG
FNVRADAGAR KLAEGNGVQL NYYSIIYDAV DEIKVAMSGM LAPERREEII GSAEIRTVFV
ASKIGTVAGS YITSGSVNRS AHFRLLRDNV VIYTGEVDSI KRMKDDVREV REGFECGIKL
KNYNDIKEGD QLEFFEIKEI ARTL
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