| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2747 |
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| Symbol | |
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| ID | 7972348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2895844 |
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| End bp | 2897328 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793334 |
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| Product | NusA antitermination factor |
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| Protein accession | YP_002944635 |
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| Protein GI | 239815725 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGCG AAATGTTGAT GTTGGTGGAT GCGATCTCGC GCGAGAAGAA CGTCGAGCGC
GACGTGGTTT TCGGCGCGGT CGAGTCCGCG CTGGCGCAAG CCACCAAGAA GCTCCACCAG
GGCGACGTGG ACATCCGCGT CTCGGTCGAC CGCGACAGCG GCGACTACGA AACCTTCCGC
CGCTGGCACG TCGTCCCCGA CGAAGCCGGC CTGCAGCTGC CCGACCAGGA AATCCTCCTG
TTCGAAGCCA AGGAAGAAAT GCCCGACATC GAGGTCGGCG AGTACATCGA GGAAGCGGTG
GACTCGGTGC CGATCGGCCG CATCGGCGCC ATGGCGGCCA AGCAGGTCAT CCTGCAGAAG
ATCCGCGACG CCGAGCGCGA GATGCTGCTC AACGACTTCA TGTCGCGCGG CGACAAGATC
TTCGTGGGCA CCGTCAAGCG ACTGGACAAG GGCGACATCA TCGTGGAGGC CGGCCGCGTC
GAAGGGCGCC TGCGCCGCAG CGAGATGATC GCCAAGGAAA ACCTGCGCAA CGGCGACCGC
GTGCGGGCCA TGATCATGGA AGTCGACCTG ACGCTGCGCG GCGCGCCGAT CATCCTGTCG
CGCTCGGCGC CCGAGTTCAT GATCGAGCTG TTCCGCCAGG AAGTGCCCGA GATCGAACAG
GGCCTGCTCG AAATCAAGAG CTGCGCCCGC GACCCCGGTT CGCGCGCCAA GATCGCCGTG
CTCTCGCACG ACAAGCGTGT CGACCCGATC GGCACCTGCG TCGGCGTGCG CGGCACCCGC
GTCAATGCCG TGACCAACGA GCTCGCCGGC GAGCGCGTGG ACATCGTGCT GTGGAGCGAA
GACCCGGCCC AGTTCGTGAT CGGCGCCCTG GCCCCGGCCA ACGTGTCGTC GATCGTGGTC
GATGAAGAAA AGCACGCCAT GGACGTGGTG GTCGACGAGG AAAACCTCGC CATCGCCATC
GGCCGCGGCG GCCAGAACGT GAGGCTCGCC TCCGATCTGA CCGGCTGGAA GATCAACATC
ATGGACGCCA ATGAATCGGC CCAGAAGCAG GCGAGCGAAA CCGACGCCAG CCGCAAGCTG
TTCATGGAAA AGCTCGACGT CGACGAGGAA ATCGCCGACA TCCTGATCTC CGAGGGCTTC
AACAGCCTCG AGGAAGTCGC CTATGTGCCG ATCTCCGAAA TGCTGGAGAT CGAAGCCTTC
GACGAAGACA CCATCAACGA GCTTCGTTCG CGCGCCAAGG ATGCGCTGTT GACCATGGAA
ATCGCCAAGG AAGAGGGCGT CGAGACCGTC TCGCAGAATC TGCGCGACCT CGAAGGCCTC
GACCCCGAGC TGATTCCCAA GCTGGCCGAG GCGGGTGTGC ACACCCGCGA CGACCTCGCC
GACCTCGCGG TCGATGAACT CACCGAGATC ACCGGCCACA GCGCCGATGA CGCCAAAGCC
CTCATCTTGA AAGCCCGCGA ACATTGGTTC GCCGGCCAAG AGTGA
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| Protein sequence | MNREMLMLVD AISREKNVER DVVFGAVESA LAQATKKLHQ GDVDIRVSVD RDSGDYETFR
RWHVVPDEAG LQLPDQEILL FEAKEEMPDI EVGEYIEEAV DSVPIGRIGA MAAKQVILQK
IRDAEREMLL NDFMSRGDKI FVGTVKRLDK GDIIVEAGRV EGRLRRSEMI AKENLRNGDR
VRAMIMEVDL TLRGAPIILS RSAPEFMIEL FRQEVPEIEQ GLLEIKSCAR DPGSRAKIAV
LSHDKRVDPI GTCVGVRGTR VNAVTNELAG ERVDIVLWSE DPAQFVIGAL APANVSSIVV
DEEKHAMDVV VDEENLAIAI GRGGQNVRLA SDLTGWKINI MDANESAQKQ ASETDASRKL
FMEKLDVDEE IADILISEGF NSLEEVAYVP ISEMLEIEAF DEDTINELRS RAKDALLTME
IAKEEGVETV SQNLRDLEGL DPELIPKLAE AGVHTRDDLA DLAVDELTEI TGHSADDAKA
LILKAREHWF AGQE
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