| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2741 |
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| Symbol | |
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| ID | 7972342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2888271 |
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| End bp | 2890067 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793328 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002944629 |
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| Protein GI | 239815719 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.982648 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGGTTT GGCTGCTTCT TTTTCTGGCG CTCTCGGCGG CTCCTTCATG GGCCGCCCAT
GCCTACGCGC AGTTCGGCGA CATCAAGTAC CCGCCCGGCT TCACCCACTT CAGCTACGTC
AATCCGAACG CGCCCAAGGG CGGCGAGATC CGGATGGTGC CGCCCACGCG GCCCACCAAC
TTCGACAAGC TCAACCCGTT CACGCTCAAG GGCACGGCGC CATCGGGCAT CGGCTCGCTG
ATTTTCGAGA GCCTGATGAC GGGCAATTCC GAAGAGCCGA CCACGGTCTA TGGCCTGCTT
GCCGAAGACG TCGAGGTGGC GCCCGACCGC CTGTCGGCCA CCTTCCGCCT GAACCCCAAG
GCGCGCTTCA ACGACGGCTC GCCGGTGCTG GCGGCCGACG TGGTGCATTC GTTCAACACC
CTGACCGGCC CGCTGGCCGC GCCGCAGTAC CGCACCATCT ACGCAGAAGT GAAGAAGGCG
ACGGCCACCA GCGAGCGCGT CGTGCGCTTC GACTTCGCGA GTCCGAACCG CGAGCTGCCG
CTGGTGATCG GCGGCATGGC GGTCTTCAGC CGCCAATGGG GCGGGGGCAA GCCGTTCGAC
CAGATCGTCA CCGAGATGCC GATCGGCTCC GGCCCCTACA AGCCGGCCAG CGACCGCCTG
GGCCGCGACA TCACCTACGT GCGCCGCGCC GACTACTGGG GCGCCGACCT GCCGGTGCGC
AAGGGGCTGT ACAACTTCGA TCGCATCACC TTCCGGGTCT ACCTGGACGA AACCGCGCGC
TTCGAGGGCC TGAAGGCCGG CGAGTTCGAC TTCATGCGCG AATTCACCTC GCGCAACTGG
GCGCGCCAGT ACAAGGGCAG GCAGTTCGAC AGCGGCGAGA TCGTCAAGCG CGCCTTCGAG
AACCACAACC CCGGCGATTT CCAGGGCTAT GTGTTCAACA TCCGCAAGGA CAAGTTCAAG
GACGTGCGCG TGCGCCAGGC CATTGGTTTG GCCATGGATT TCGAGTGGCT CAACCGCCAG
CTGTTCTACG GCCTCTACAC GCGGGTGCAG GGCTACTTTC CGAACAGCGA GTTCCACGCC
GAGGGCCTGC CCAAGCCCGA CGAACTCGCG CTGATGGAGC CGCTGCGCAG CAAGCTCAAG
CCCGAGGTGT TCGGCCCGGC CCCGCAGCCG CCGAGCACGG CGCCGCCCAA CAGCCTGCGC
GAGAACCTGC GCAAGGCGAG GGCGCTGCTG GAGGAGGCCG GCTGGACCTA CCGCGACGGC
GCGCTGCGCA ACGCGAAGAA CGAGGCCTTC ACGATCGAGT TCCTCAATGA CCAGCCCGGG
CTGATCCGCG TCGTGACACC GCTGCAGACG GCGCTGCGCA AGCTCGGCAT CGAGATGACC
TTCCGCACGG TCGATTTCTC GCTCTCGCAG CAGCGCATGC AGAACTTCGA CTTCGAGATG
ACCTCGCTGC GCCTGCCCGG CAACAGCGCG CCGGGCGGCG AGCTGCTCGA GCTGTTCGGC
TCCAAGGCGG CCGACACGAC GGGCTCGTCC AACATCTGGG GCATTGCCGA TCCGGCGGTG
GACGCGGTGG TCGGCAAGGT GCTGGCGGCC ACCACGCGGC CCGAGCTGGC CACGGCCATG
CGCGTGCTCG ACCGGGTGCT CTCCAATGGC TACTACTCGA TCCCGCAGTA CTACGGCAAC
GCTTTCCTGG TCGGCTACCG GCCGGCGCCG TTCGTGCTGC CGCCGACCAT TCCGCCGTAC
TACGATGCCG GCGACTGGGC GCTCACCACG TGGTGGGCTT CGCCCATCAA CAAATGA
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| Protein sequence | MRVWLLLFLA LSAAPSWAAH AYAQFGDIKY PPGFTHFSYV NPNAPKGGEI RMVPPTRPTN
FDKLNPFTLK GTAPSGIGSL IFESLMTGNS EEPTTVYGLL AEDVEVAPDR LSATFRLNPK
ARFNDGSPVL AADVVHSFNT LTGPLAAPQY RTIYAEVKKA TATSERVVRF DFASPNRELP
LVIGGMAVFS RQWGGGKPFD QIVTEMPIGS GPYKPASDRL GRDITYVRRA DYWGADLPVR
KGLYNFDRIT FRVYLDETAR FEGLKAGEFD FMREFTSRNW ARQYKGRQFD SGEIVKRAFE
NHNPGDFQGY VFNIRKDKFK DVRVRQAIGL AMDFEWLNRQ LFYGLYTRVQ GYFPNSEFHA
EGLPKPDELA LMEPLRSKLK PEVFGPAPQP PSTAPPNSLR ENLRKARALL EEAGWTYRDG
ALRNAKNEAF TIEFLNDQPG LIRVVTPLQT ALRKLGIEMT FRTVDFSLSQ QRMQNFDFEM
TSLRLPGNSA PGGELLELFG SKAADTTGSS NIWGIADPAV DAVVGKVLAA TTRPELATAM
RVLDRVLSNG YYSIPQYYGN AFLVGYRPAP FVLPPTIPPY YDAGDWALTT WWASPINK
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