Gene Vapar_2740 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2740 
Symbol 
ID7972341 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2887451 
End bp2888233 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content64% 
IMG OID644793327 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002944628 
Protein GI239815718 
COG category[I] Lipid transport and metabolism 
COG ID[COG0623] Enoyl-[acyl-carrier-protein] reductase (NADH) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.296305 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCTTTC TTTCCGGCAA AAAACTGTTG ATCACCGGCG TGTTGAGCAA TCGCTCCATT 
GCCTACGGCA TAGCCAAGGC CTGTCACGAA CAAGGCGCCG AGCTTGCTTT CAGCTACGTC
GGCGAGCGAT TCAAGGACCG TATCACCGAA TTCGCCGCGG ACTTCGGCTC CAAGCTTATT
TTTGACTGCG ACGTGGGCGA CGACGCGCAG ATCGACAAGC TCTTTGCCGA TCTGGCGCAG
GCGTGGCCCA GGTTCGACGG GTTCGTGCAC AGCATCGGCT TTGCGCCGCG CGAGGCCATT
GCGGGCGACT TCCTCGAAGG CTTGTCGCGC GAAGGCTTCA AGATTGCGCA CGACATCAGC
GCCTATAGCT TCCCGGCCAT GGCCAAGGCG GCCCTGCCCT ACCTCAACGA CAAGTCGGCG
CTTCTCACGC TGACCTACCT CGGCGCCGAG CGCGCGCTGC CCAACTACAA CACCATGGGC
CTGGCCAAGG CCTCGCTCGA GGCCTCGGTG CGCTACACCG CGGCTTCGCT CGGCCCCAAG
GGCATGCGGG TCAACGGCAT CAGCGCCGGG CCGATCAAGA CGCTGGCGGC CAGCGGCATC
AAGGGCTTCG GCAAGATGCT GTCCGCCGTG GCCGACGCCT CGCCCATTCG CCGCAACGTG
ACCATCGAGG AAGTCGGCAA CGTGGCTGCC TTCCTGCTGA GCGACCTGGC CAGCGGCGTC
ACCGCCGAGA TCACCTATGT GGACGGCGGC TTCAGCAACG TCGTGGCGGG CATGGCCGAG
TAA
 
Protein sequence
MGFLSGKKLL ITGVLSNRSI AYGIAKACHE QGAELAFSYV GERFKDRITE FAADFGSKLI 
FDCDVGDDAQ IDKLFADLAQ AWPRFDGFVH SIGFAPREAI AGDFLEGLSR EGFKIAHDIS
AYSFPAMAKA ALPYLNDKSA LLTLTYLGAE RALPNYNTMG LAKASLEASV RYTAASLGPK
GMRVNGISAG PIKTLAASGI KGFGKMLSAV ADASPIRRNV TIEEVGNVAA FLLSDLASGV
TAEITYVDGG FSNVVAGMAE