Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2740 |
Symbol | |
ID | 7972341 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2887451 |
End bp | 2888233 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644793327 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_002944628 |
Protein GI | 239815718 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0623] Enoyl-[acyl-carrier-protein] reductase (NADH) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.296305 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCTTTC TTTCCGGCAA AAAACTGTTG ATCACCGGCG TGTTGAGCAA TCGCTCCATT GCCTACGGCA TAGCCAAGGC CTGTCACGAA CAAGGCGCCG AGCTTGCTTT CAGCTACGTC GGCGAGCGAT TCAAGGACCG TATCACCGAA TTCGCCGCGG ACTTCGGCTC CAAGCTTATT TTTGACTGCG ACGTGGGCGA CGACGCGCAG ATCGACAAGC TCTTTGCCGA TCTGGCGCAG GCGTGGCCCA GGTTCGACGG GTTCGTGCAC AGCATCGGCT TTGCGCCGCG CGAGGCCATT GCGGGCGACT TCCTCGAAGG CTTGTCGCGC GAAGGCTTCA AGATTGCGCA CGACATCAGC GCCTATAGCT TCCCGGCCAT GGCCAAGGCG GCCCTGCCCT ACCTCAACGA CAAGTCGGCG CTTCTCACGC TGACCTACCT CGGCGCCGAG CGCGCGCTGC CCAACTACAA CACCATGGGC CTGGCCAAGG CCTCGCTCGA GGCCTCGGTG CGCTACACCG CGGCTTCGCT CGGCCCCAAG GGCATGCGGG TCAACGGCAT CAGCGCCGGG CCGATCAAGA CGCTGGCGGC CAGCGGCATC AAGGGCTTCG GCAAGATGCT GTCCGCCGTG GCCGACGCCT CGCCCATTCG CCGCAACGTG ACCATCGAGG AAGTCGGCAA CGTGGCTGCC TTCCTGCTGA GCGACCTGGC CAGCGGCGTC ACCGCCGAGA TCACCTATGT GGACGGCGGC TTCAGCAACG TCGTGGCGGG CATGGCCGAG TAA
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Protein sequence | MGFLSGKKLL ITGVLSNRSI AYGIAKACHE QGAELAFSYV GERFKDRITE FAADFGSKLI FDCDVGDDAQ IDKLFADLAQ AWPRFDGFVH SIGFAPREAI AGDFLEGLSR EGFKIAHDIS AYSFPAMAKA ALPYLNDKSA LLTLTYLGAE RALPNYNTMG LAKASLEASV RYTAASLGPK GMRVNGISAG PIKTLAASGI KGFGKMLSAV ADASPIRRNV TIEEVGNVAA FLLSDLASGV TAEITYVDGG FSNVVAGMAE
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