| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2738 |
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| Symbol | |
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| ID | 7972339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2884229 |
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| End bp | 2886532 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793325 |
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| Product | Lysine decarboxylase |
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| Protein accession | YP_002944626 |
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| Protein GI | 239815716 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTC GCTTCCCCAT CGTCATCATC GACGAGGACT TCCGCTCCGA AAACACTTCG
GGCCTCGGCA TTCGCGCGCT CGCGCAGGCC ATCGAGACGG AGGGCTTCGA GGTGCTGGGC
GTCACGAGCT ACGGGGACCT GAGCCAGTTC GCGCAGCAGC AAAGCCGCGC CAGCGCCTTC
ATCCTGTCGA TCGACGACGA GGAATTCACG GTCGGCCCCG ACCTCGACCC CGCGGTGCTG
AGCCTGCGCA ACTTCATCGG CGAGGTGCGG CGCAAGAACG CCGACGTGCC GATCTACATC
TACGGCGAAA CCAAGACCTC GCGCCACATT CCCAACGACA TCCTGCGCGA GCTGCACGGC
TTCATCCACA TGTTCGAGGA CACGCCGGAG TTCGTGGCGC GCCACATCAT CCGCGAGGCC
AAGAGCTACC TCGAAGGCGT GCAGCCGCCG TTCTTCAAGG CGCTGATCGA CTACGCCGAA
GACGGCTCGT ACTCGTGGCA CTGCCCGGGC CATTCGGGCG GCGTGGCGTT CCTGAAGAGC
CCCGTGGGCC AGATGTTCCA CCAGTTCTTC GGCGAGAACA TGCTGCGCGC CGACGTCTGC
AACGCGGTGG AAGAACTCGG CCAGCTGCTC GACCACACCG GCCCGGTGGC GGCCAGCGAG
CGCAATGCGG CGCGCATCTT CAACGCCGAC CATTGCTTCT TCGTGACCAA CGGCACCAGC
ACCAGCAACA AGATGGTCTG GCACCACACG GTGGCGCCCG ACGACGTGGT GGTGGTCGAC
CGCAACTGCC ACAAGTCGAT CCTGCACGCG ATCATCATGA CCGGCGCGAT CCCGGTGTTC
ATGAAGCCCA CGCGCAACCA CTTCGGCATC ATCGGACCGA TTCCGAAGAG CGAGTTCGAG
CAGAGCGCCA TCAAGGCCAA GATCAAGGCC AACCCGCTCT TGGCCGACGT GGACCCCAAC
AAGGTCAAGC CGCGCGTGAT GACGCTCACG CAGTCGACCT ACGACGGCGT GATCTACAAC
ACCGAGACCA TCAAGAACAT GCTCGACGGC TACGTCGACA CGCTGCACTT CGACGAGGCC
TGGCTGCCGC ATGCGGCCTT CCACCCGTTC TATGGCGCCT ACCACGCGAT GGGCAAGCGC
CGCGTGCGGC CGAAGGAGTC GCTCGTGTTT GCCACGCAGT CGACCCACAA GCTGCTCGCG
GGCATCAGCC AGGCCAGCCA CGTGCTGGTG CAGGACTCGC AGAACCGTGC GCTCGACCGC
GACCTGTTCA ACGAGGCCTA CCTGATGCAC TCGTCGACCA GCCCGCAGTA CGCGATCATC
GCGAGCTGCG ACGTGGCCGC CGCCATGATG GAGCCGCCCG GCGGCACTGC GCTGGTGGAA
GAAAGCATCC TGGAGGCGCT CGACTTCCGC CGCGCCATGC GCAAGGTGGA AGACGAATTC
GGCAAGGACG AGTGGTGGTT CAAGGTCTGG GGCCCCGAGA AGCTCGTCGA CGAAGGCATC
GGCCGCGCCG AAGACTGGAT CATGACGGGC GAGAAGAACG GCAAGCAGAG CAAGAGCAAG
AAGTCGCCGC GCAACTGGCA CGGCTTCGGC GAGCTGGCCG ACGGCTTCAA CATGCTCGAC
CCGATCAAGT CGACCATCGT GACCCCGGGC CTCGACCTCG AAGGCAACTT TGCCGACACC
GGCATTCCCG CGAGCGTGGT GACCAAGTTC CTGGCCGAGC ATGGCGTGAT CGTGGAGAAG
ACCGGCCTGT ACAGCTTCTT CATCATGTTC ACCATCGGCA TCACCAAGGG CCGCTGGAAC
ACGCTGCTCA CGGCGCTGCA GCAGTTCAAG GACGACTACG CGCGCAACCA GCCGATGTGG
CGCATCCTGC CGGAGTTCTG CCAGCAGCAT CCCGGCTACG AGCGCCTGGG CCTGCGCGAC
CTGTGCCAGC ACATCCACCA GCTCTACGCA CGCTACGACG TGGCGCGCCT GACGACCGAG
ATGTACCTGA GCGACCTCAC GCCGGCCATG AAGCCGAGCG ACGCCTTCGC CCACATTGCG
CACCGCAAGA CCGAGCGCGT GGAGATCGAC GAACTCGAAG GCCGCATCAC CACGAGCCTG
ATCACGCCGT ACCCGCCGGG CATTCCGCTC CTGATTCCGG GCGAGGTCTT CAACAAGAAG
ATCGTCGACT ACCTCCGGTT CTCGCGCGAG TTCAACTCGC AGTGCCCGGG CTTCGAGACC
GACATCCACG GCCTGGTGGC GCGCATCGAC GAAACCGGCA AGAAGCGCTA CTACGCGGAC
TGCGTGGCCG CGCCGAAGAA GTAG
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| Protein sequence | MKFRFPIVII DEDFRSENTS GLGIRALAQA IETEGFEVLG VTSYGDLSQF AQQQSRASAF
ILSIDDEEFT VGPDLDPAVL SLRNFIGEVR RKNADVPIYI YGETKTSRHI PNDILRELHG
FIHMFEDTPE FVARHIIREA KSYLEGVQPP FFKALIDYAE DGSYSWHCPG HSGGVAFLKS
PVGQMFHQFF GENMLRADVC NAVEELGQLL DHTGPVAASE RNAARIFNAD HCFFVTNGTS
TSNKMVWHHT VAPDDVVVVD RNCHKSILHA IIMTGAIPVF MKPTRNHFGI IGPIPKSEFE
QSAIKAKIKA NPLLADVDPN KVKPRVMTLT QSTYDGVIYN TETIKNMLDG YVDTLHFDEA
WLPHAAFHPF YGAYHAMGKR RVRPKESLVF ATQSTHKLLA GISQASHVLV QDSQNRALDR
DLFNEAYLMH SSTSPQYAII ASCDVAAAMM EPPGGTALVE ESILEALDFR RAMRKVEDEF
GKDEWWFKVW GPEKLVDEGI GRAEDWIMTG EKNGKQSKSK KSPRNWHGFG ELADGFNMLD
PIKSTIVTPG LDLEGNFADT GIPASVVTKF LAEHGVIVEK TGLYSFFIMF TIGITKGRWN
TLLTALQQFK DDYARNQPMW RILPEFCQQH PGYERLGLRD LCQHIHQLYA RYDVARLTTE
MYLSDLTPAM KPSDAFAHIA HRKTERVEID ELEGRITTSL ITPYPPGIPL LIPGEVFNKK
IVDYLRFSRE FNSQCPGFET DIHGLVARID ETGKKRYYAD CVAAPKK
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