| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2733 |
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| Symbol | |
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| ID | 7972333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2880304 |
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| End bp | 2881509 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793319 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002944621 |
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| Protein GI | 239815711 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.464024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATTGA AATGGACTGC GGTCGCACTG GCTGCTCTCA CGCTTGTGGC TTGCGGCAAG
AAAGAAGAAG CTGCTGCGCC CGCCGCTCCG GCGCCCACGG CAGCGGCCCC CGCACCTGCA
GCGCCTCCGG CAGATGCATT GATCGTCAAG ATCGGCCACG TCGGCCCCAC CAGCGGTGCC
ATTGCCCACC TGGGCAAGGA CAACGAGCTC GGCGCCAAGA TGGCCATCGA AGACCTCAAT
GCCAAGGGCC TGAAGATCGG CGACAAGGTT GCCAAGTTCG AACTGCTGGC AGAAGACGAC
GCCGGCGATC CGAAGCAAGG CACCGCAGTG GCCCAGAAGC TGGTCGACAG CAAGGTCAAC
GGCATCGTCG GCCACCTGAA CTCGGGCACG ACCATTCCTG CTTCCAAGCT CTACAGCGAC
GCCGGCATTC CGCAGGTCTC GCCGTCGGCA ACCAACCCCA AGTACACGCG CCAGGGCTTC
AAGACCACGT TCCGCGTGGT GGCCGACGAC ACCCAGCTCG GCGGCACGCT CGGCAAGTAC
GCCGTCGAAA CGCTCAAGGG CAAGAACATT GCCGTGATCG ACGACCGCAC GGCCTACGGC
CAGGGCGTTG CCGAAGAGTT CGAGAAGGCG GCCAAGGCTG CCGGCGGGAC CATCGTGGGC
CACGAATTCA CCACCGACAA GTCGACCGAC TTCAACGCCA TCCTGACCAA GCTCAAGTCC
GCCAAGCCTG ACGTGCTGTT CTTCGGCGGC ATGGACGCCG TCGGCGGCCC GATGCTCAAG
CAGGTCAAGC AGCTCGGCCT GAACGTCAAG TTCATGGGCG GCGACGGCCT GTGCACCGGC
GAACTGCCCA AGCTGGCTGG CGACGCCATC GGCGAAGAGA TGGTGGTCTG CGCCGAGGCC
GGCGGTGTCG ACGGCGACTT CAAGCAGCCG CTGGAAGACT TCAAGGCCAG GTTCAAGACC
AAGAACGGCG TGGACGTGCA GATCTACGCA CCGTACGTCT ACGACGCGGT CAACGTGCTG
GCCGAAGCCA TGGTCAAGGC CGGTTCCGCC GACCCTGAAA AGTACCTGCC CGAAGTCGGC
AAGGTGCAAT ACAAGGGCGT GACCGGCCCG ATCGCCTTCG ACGAAAAGGG CGACATCAAG
AACGGCGCGC TGACGCTCTT CACCTACAAG GGTGGCGTGC GTACGCAGAT CGCCGTGGTT
CGCTGA
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| Protein sequence | MQLKWTAVAL AALTLVACGK KEEAAAPAAP APTAAAPAPA APPADALIVK IGHVGPTSGA
IAHLGKDNEL GAKMAIEDLN AKGLKIGDKV AKFELLAEDD AGDPKQGTAV AQKLVDSKVN
GIVGHLNSGT TIPASKLYSD AGIPQVSPSA TNPKYTRQGF KTTFRVVADD TQLGGTLGKY
AVETLKGKNI AVIDDRTAYG QGVAEEFEKA AKAAGGTIVG HEFTTDKSTD FNAILTKLKS
AKPDVLFFGG MDAVGGPMLK QVKQLGLNVK FMGGDGLCTG ELPKLAGDAI GEEMVVCAEA
GGVDGDFKQP LEDFKARFKT KNGVDVQIYA PYVYDAVNVL AEAMVKAGSA DPEKYLPEVG
KVQYKGVTGP IAFDEKGDIK NGALTLFTYK GGVRTQIAVV R
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