Gene Vapar_2733 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2733 
Symbol 
ID7972333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2880304 
End bp2881509 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content64% 
IMG OID644793319 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_002944621 
Protein GI239815711 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.464024 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATTGA AATGGACTGC GGTCGCACTG GCTGCTCTCA CGCTTGTGGC TTGCGGCAAG 
AAAGAAGAAG CTGCTGCGCC CGCCGCTCCG GCGCCCACGG CAGCGGCCCC CGCACCTGCA
GCGCCTCCGG CAGATGCATT GATCGTCAAG ATCGGCCACG TCGGCCCCAC CAGCGGTGCC
ATTGCCCACC TGGGCAAGGA CAACGAGCTC GGCGCCAAGA TGGCCATCGA AGACCTCAAT
GCCAAGGGCC TGAAGATCGG CGACAAGGTT GCCAAGTTCG AACTGCTGGC AGAAGACGAC
GCCGGCGATC CGAAGCAAGG CACCGCAGTG GCCCAGAAGC TGGTCGACAG CAAGGTCAAC
GGCATCGTCG GCCACCTGAA CTCGGGCACG ACCATTCCTG CTTCCAAGCT CTACAGCGAC
GCCGGCATTC CGCAGGTCTC GCCGTCGGCA ACCAACCCCA AGTACACGCG CCAGGGCTTC
AAGACCACGT TCCGCGTGGT GGCCGACGAC ACCCAGCTCG GCGGCACGCT CGGCAAGTAC
GCCGTCGAAA CGCTCAAGGG CAAGAACATT GCCGTGATCG ACGACCGCAC GGCCTACGGC
CAGGGCGTTG CCGAAGAGTT CGAGAAGGCG GCCAAGGCTG CCGGCGGGAC CATCGTGGGC
CACGAATTCA CCACCGACAA GTCGACCGAC TTCAACGCCA TCCTGACCAA GCTCAAGTCC
GCCAAGCCTG ACGTGCTGTT CTTCGGCGGC ATGGACGCCG TCGGCGGCCC GATGCTCAAG
CAGGTCAAGC AGCTCGGCCT GAACGTCAAG TTCATGGGCG GCGACGGCCT GTGCACCGGC
GAACTGCCCA AGCTGGCTGG CGACGCCATC GGCGAAGAGA TGGTGGTCTG CGCCGAGGCC
GGCGGTGTCG ACGGCGACTT CAAGCAGCCG CTGGAAGACT TCAAGGCCAG GTTCAAGACC
AAGAACGGCG TGGACGTGCA GATCTACGCA CCGTACGTCT ACGACGCGGT CAACGTGCTG
GCCGAAGCCA TGGTCAAGGC CGGTTCCGCC GACCCTGAAA AGTACCTGCC CGAAGTCGGC
AAGGTGCAAT ACAAGGGCGT GACCGGCCCG ATCGCCTTCG ACGAAAAGGG CGACATCAAG
AACGGCGCGC TGACGCTCTT CACCTACAAG GGTGGCGTGC GTACGCAGAT CGCCGTGGTT
CGCTGA
 
Protein sequence
MQLKWTAVAL AALTLVACGK KEEAAAPAAP APTAAAPAPA APPADALIVK IGHVGPTSGA 
IAHLGKDNEL GAKMAIEDLN AKGLKIGDKV AKFELLAEDD AGDPKQGTAV AQKLVDSKVN
GIVGHLNSGT TIPASKLYSD AGIPQVSPSA TNPKYTRQGF KTTFRVVADD TQLGGTLGKY
AVETLKGKNI AVIDDRTAYG QGVAEEFEKA AKAAGGTIVG HEFTTDKSTD FNAILTKLKS
AKPDVLFFGG MDAVGGPMLK QVKQLGLNVK FMGGDGLCTG ELPKLAGDAI GEEMVVCAEA
GGVDGDFKQP LEDFKARFKT KNGVDVQIYA PYVYDAVNVL AEAMVKAGSA DPEKYLPEVG
KVQYKGVTGP IAFDEKGDIK NGALTLFTYK GGVRTQIAVV R