| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2723 |
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| Symbol | |
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| ID | 7972323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2868687 |
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| End bp | 2872556 |
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| Gene Length | 3870 bp |
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| Protein Length | 1289 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793309 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_002944611 |
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| Protein GI | 239815701 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.562106 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACGACCA CGACACCTTC CGCCCCCTTG CGCATCGACT TTCCCGAATC GCTTCCGGTC
TCCGGCCGGC GCGATGAAAT CATGGCCGCC ATCGCGGCGC ACCAGGTGGT GATCGTCTGC
GGCGAAACGG GCTCGGGCAA GACCACCCAG TTGCCGAAGA TCGCGCTGGC GCTCGGCCGC
GGCAAGCTCA ATGCGCCGCC GGGCCAGGGC CGGCTCATCG GCCACACGCA GCCGCGGCGC
ATTGCCGCCA GCTCGGTGGC CAAGCGCATC GCCGAAGAGC TGAAGACGCC GCTGGGCGAC
GTGGTCGGCT TCAAGGTGCG CTTCCAGGAC CGGCTGAGCC GCGACGCGTC GGTCAAGCTC
ATGACCGACG GCATCCTGCT GGCCGAGACG CAGACCGATC CGCTGCTCAA GGCCTACGAC
ACGCTGATCA TCGACGAGGC GCACGAGCGC TCGCTCAACA TCGACTTCCT GCTCGGCTAC
CTGCGCGAGA TCCTTCCGCG CCGGCCCGAC CTGAAGGTGA TCGTGACCTC GGCCACCATC
GACGCCGAAC GCTTCGCGCA GCATTTCGCC TCGGCAAAAG GCCCGGCGCC GACGATCATG
GTGTCCGGGC GCACCTTCCC GGTCGAGCAG CGCTACCGGC CCTTCGAGGA GTCGCGCGAG
CACGACCTGA ACGACGCCAT TGCCGACGGC GTCGACGAGC TCTGGCGCGA TCCGCACAAC
GCCGGCGACA TCCTGGTCTT CCTGCCCGGC GAGCGCGAGA TCCGCGAGGC CGCCGACCAC
CTGCGCCGCC ACCTGAGCCA CCAGCCGCTG CTGCGCAACG CCGAGGTGCT GCCGCTGTTC
GCGCGGCTGT CGGGCCCCGA GCAGGACCGC ATCTTCGACA GCCATTCGGG CCGGCGCATC
GTGCTGGCCA CCAACGTGGC GGAAACCTCG CTCACCGTGC CGGGAATCCG CTACGTGATC
GACACCGGCA CGGCGCGCGT GAAGCGCTAC AGCTTCCGCA GCAAGGTCGA GCAGCTGCTG
GTCGAGCCGA TCAGCCAGGC AGCGGCCAAC CAGCGCGCCG GCCGCTGCGG CCGCGTGGCC
AACGGCATCT GCATCCGGCT CTACGACGAG AAGGATTTCG AAGGCCGGCC GCGCTTCACC
GACCCGGAAA TCCTGCGCTC GTCTCTCGCG GGCGTGATCC TGCGCATGAA GTCGCTGCGG
CTGGGCGACG TGGCGCGCTT TCCGTTTCTC GAGGCGCCCT CGCCGCGCGC GATTGCCGAC
GGCTACCAGC TGCTCAACGA GCTCGGCGCG GTCGACGACG CCAACGAACT CACGGCCACG
GGCGCCGAGC TCGCCAGGCT GCCGCTCGAT CCGCGCGTGG GCCGGATGAT TCTTGAAGCC
CGCACGCGCG GCGCGCTCGA AGAGGTGCTG GTCATCGCGT CGGCGCTCAG CGTGCAGGAC
GTGCGCGACC GGCCGATGGA CGCGCAGCAG CAGGCCGACC AGGCGCATTC CAAGTTCGAC
GACGAGAAGA GCGAGTTCAG CGGCTACCTG CGGCTGTGGA AATGGATCGC CGATGCGCGC
GGCGGCCATG GAGACACCCA CAAGCTCAGC AACAGGCAGT ACGAGCAGCT GCTGCGCCAG
AACTTCATCA ACATCCGCCG CGTGCGCGAA TGGCGCGACA TCCATTCGCA GCTGCTCACG
GTGGTCACCG AGCACAAGTG GCGCATCAAC GCCGAGCCGG CCGGCTACGA GCCGCTGCAC
CTGTCGATGC TCGCGGGCCT GCTTGGCAAC GTCGGCTGGA AGCTGGAAGA CGACGAGGCC
TACCTGGGTG CGCGCGGCAT CAAGTTCTAC AAGCATCCGG GCGCGCACCT GAAGAAGAAG
CCCGGCCGCT GGATCGTCGC GGCCGAGCTG GTCGAGACCA CGCGGCTCTT CGGCCGCGGC
ATTGCCAACA TCGAGCCGCA GTGGCTCGAA CAGGTGGCCG GCCACCTGCT GAAGAAGCAG
CTGCTCGATC CGCATTGGGA GAAGAAGGGC GCGCAGGTTT CGGCGCTGGA GCGCGCAACG
CTCTACGGCC TCGTGGTGTA CAGCGGGCGC CGCGTCGACT TCACGAAGGT GGACCCGGTG
GCGGCGCGCG AGATCTTCAT CCGCGAAGCG CTGGTCGGCG GGCAGTGGGA GAGCAAGTTT
CCGTTCCTCG CGGCCAACCG CAAGCTGGTG CGCGAGGTCG AAGGGCTGGA GCACAAGGCG
CGCCGGCAGG ACGTGCTGGT CGACGACGAG CTGATCTTCG CCTTCTACGA CGCGCAGCTG
CCCGCCGACG TGGCCAGCGG CATCAGCTTC GAGAACTGGT ACCGCCATGC CTCCAGGGAG
CAGCCGCGCC TGCTCTTCCT CACGCGCGAG GAACTGATGC GCCACCAGGC CGCGGGCATC
ACCACGCAGT CCTTTCCGCC CACGCTGCGG CTGGGCGGCG TCGACTGCGC GGCAAGCTAC
CTGCACGCGC CTGGCGACGC CAAGGACGGC CTCACGGTCA GCGTGCCGCT CTTCGTGCTC
AACCAGGTGA GCGAAGAGCG CTGCGAATGG TTGGTGACCG GCATGCTCAA GGACAAGATC
CAGGCGCTGC TCAAGAGCCT GCCGCAGCGG CCGCGCTCGC GGCTGGTGCC GCTGCCCGAG
TCGGCCGCCA GGCTGGCGGA AGAGCTTTCG GCGCCCGAAG TGTTCGGCCA CGGCTCGCTG
ACCGATGTGC TGCTCAAGCG CGTGCGCGAC ACCACGAGCA TCGACGTCAA GCGTGCCGAC
TTCAAGCTCG ACATGCTGCC GCCGCATCTG TTCATGAACC TGCGCATCGT GGACGAGCAC
GGTCGCCAGC TTGGCATGGG GCGCAACCTG GGTGCGCTCA AGGCGGAGCT GGGCGCGCAG
GCGCGCGGCG CTTTTCAGGC GCTGGCCGGC CTCAACGTCA AGGCGTCGGC GGACCGCAAG
CCGGCCGACG CAGCCGAGGG ACACGGGCAG GCCAAGGGCA ACGCCGCTGC GCCGGCACCC
GCCGCGCCCA GCCTGCCTGC CGGCCAGCGC TACACCAACT GGAGCTTCGG CGAACTGCCC
GAGCTGATGG AAGTGCGGCG CGGATCGCAG TCGCTGATCG GATTTCCGGC GCTGCGCGAC
GAGGGCGATG CCGTCACCAT CGAGGTGTTC GACGAGCCCG CCGTGGCGGC CGCCAAGCAC
CGCGCCGGGC TGCGCCGCCT GTTCGCGCTG CAGCTGAAGG ATGCGCTCAA GTACCTCGAG
AAGAACATCC CCGACCTGCA GAAGATGGCC GTGGCCTACA TGCCGCTGGG TACCTCGGAG
GAGCTGCGCG CGCAGATCAT CGACGTGGCG ATCGACCGGG CCTTCCTGCA GGAGCCGCTG
CCGACCGACG AGTTCGCCTT CAAGCGCCGC CTCGAAGAGG GCCGCGGCCG GCTCACGCTG
ATCGCCAACG AGGTGGCGCG GCTGGCCTCG GCCATCCTGG CCGAGTACGC GGCCGCCGCG
CGCAAGATCA AGGACACCAA GCTCCAGCCC GAGGCCGTGC AGGACGCCGC GCAGCAGCTG
CAGCGCCTGG TCGGCAAGCG CTTCATCGCG GACGCGCCGT GGACGCAGCT GCAGCATTTC
GCGCGCTATC TCAAGGCCAT CGTGCTGCGG CTCGACAAGC TGCGCAGCGA CCCCGCGCGC
GATGCCGCCA AGCTGGCCGA GCTGCGGCCG CAGGAGCAGC GCTACTGGCG GCTGGTGGCC
GAGCGCAAGG GCGTGGTGGA CGAGCGCATG CTGGAGTTCC GCTGGCTGCT CGAGGAGCTG
CGCGTGAGCT TCTTCGCGCA GGAGCTGCGC ACGCCGCAGC CGGTCAGCAT CAAGCGGCTG
GACAAGGCCT GGGCCCAGCT GCAGGCCTGA
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| Protein sequence | MTTTTPSAPL RIDFPESLPV SGRRDEIMAA IAAHQVVIVC GETGSGKTTQ LPKIALALGR
GKLNAPPGQG RLIGHTQPRR IAASSVAKRI AEELKTPLGD VVGFKVRFQD RLSRDASVKL
MTDGILLAET QTDPLLKAYD TLIIDEAHER SLNIDFLLGY LREILPRRPD LKVIVTSATI
DAERFAQHFA SAKGPAPTIM VSGRTFPVEQ RYRPFEESRE HDLNDAIADG VDELWRDPHN
AGDILVFLPG EREIREAADH LRRHLSHQPL LRNAEVLPLF ARLSGPEQDR IFDSHSGRRI
VLATNVAETS LTVPGIRYVI DTGTARVKRY SFRSKVEQLL VEPISQAAAN QRAGRCGRVA
NGICIRLYDE KDFEGRPRFT DPEILRSSLA GVILRMKSLR LGDVARFPFL EAPSPRAIAD
GYQLLNELGA VDDANELTAT GAELARLPLD PRVGRMILEA RTRGALEEVL VIASALSVQD
VRDRPMDAQQ QADQAHSKFD DEKSEFSGYL RLWKWIADAR GGHGDTHKLS NRQYEQLLRQ
NFINIRRVRE WRDIHSQLLT VVTEHKWRIN AEPAGYEPLH LSMLAGLLGN VGWKLEDDEA
YLGARGIKFY KHPGAHLKKK PGRWIVAAEL VETTRLFGRG IANIEPQWLE QVAGHLLKKQ
LLDPHWEKKG AQVSALERAT LYGLVVYSGR RVDFTKVDPV AAREIFIREA LVGGQWESKF
PFLAANRKLV REVEGLEHKA RRQDVLVDDE LIFAFYDAQL PADVASGISF ENWYRHASRE
QPRLLFLTRE ELMRHQAAGI TTQSFPPTLR LGGVDCAASY LHAPGDAKDG LTVSVPLFVL
NQVSEERCEW LVTGMLKDKI QALLKSLPQR PRSRLVPLPE SAARLAEELS APEVFGHGSL
TDVLLKRVRD TTSIDVKRAD FKLDMLPPHL FMNLRIVDEH GRQLGMGRNL GALKAELGAQ
ARGAFQALAG LNVKASADRK PADAAEGHGQ AKGNAAAPAP AAPSLPAGQR YTNWSFGELP
ELMEVRRGSQ SLIGFPALRD EGDAVTIEVF DEPAVAAAKH RAGLRRLFAL QLKDALKYLE
KNIPDLQKMA VAYMPLGTSE ELRAQIIDVA IDRAFLQEPL PTDEFAFKRR LEEGRGRLTL
IANEVARLAS AILAEYAAAA RKIKDTKLQP EAVQDAAQQL QRLVGKRFIA DAPWTQLQHF
ARYLKAIVLR LDKLRSDPAR DAAKLAELRP QEQRYWRLVA ERKGVVDERM LEFRWLLEEL
RVSFFAQELR TPQPVSIKRL DKAWAQLQA
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