| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2717 |
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| Symbol | |
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| ID | 7972317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2861987 |
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| End bp | 2863162 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793303 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_002944605 |
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| Protein GI | 239815695 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.11396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCGTA CCCTCCAGCT CGCCGAACAA CTCATCTCGC GCCCCTCGGT CACCCCCGAC
GATGCGGGCT GCCAACAGAT CCTCGGCGAA CGGCTGGCAC GGCTGGGCTT CACGCTCGAA
ACCATCGAAA GCGGCCCGGC CGATTTTCGC GTGACCAACC TGTGGGCGGT GCGCCGTCCG
GCCGGCACCG CGCCGACGAA GACGCTGGTG TTCGCAGGCC ACACCGACGT GGTGCCCACG
GGGCCGGTCG AGCAGTGGAC CAGCCATCCG TTCACGCCCA CCCACCGCGG CGGCAAGCTC
TATGGCCGCG GCGCATGCGA CATGAAGACA TCGGTCGCGG CCTTCGTGGT CTCCATCGAG
GAATTCCTTG CGGCCACGCC CGATCCCAGG CTCACGCTCG CGCTCCTGCT CACCAGCGAC
GAGGAAGGCC CGGGCGTCGA TGGCACGGTC ATCGTCTGCA ACGCGCTGGC CGCGCGTGGC
GAAACCATCG ACTACTGCAT CGTCGGCGAA CCCACGGCCG TCGAGCGCTG CGGCGACATG
ATCAAGAACG GCCGCCGCGG CACCATGAGC GGCAAGCTCA CGGTCCATGG CGTGCAGGGC
CACATCGCCT ACCCGCACCT CGCGAAGAAC CCGGTGCATG CCGTGGCGCC CGCACTGGCG
GAGCTGGTGG CCATCAACGC CGCGGGCGGC TGGGACGCGG GCAATGCGTA CTTCCAGCCC
ACCAGCTGGC AGATCAGCAA CTTTCATGCG GGCACCGGCG CGAGCAACGT GATTCCGGGC
AGTGCGGTCA TCGACTTCAA TTTCCGCTTC TCGACCGAAT CGACGCCCGA GTCGCTGCAA
AAGCGCGTGC ATGCGGTGCT CGATGCGCAC GGCGTGGACT GCACGCTGGC CTGGACCATC
GGCGGCCTGC CTTTTCTCAC GACGCCGGGC GAACTCGTCA GCGCGGTGCA GGCGGCCATT
GCCGACGAAA CCGGCATCGC CACCGAGCTC TCGACCAGCG GCGGCACCAG CGATGCGCGC
TTCATCGCCA AGATCTGCAA GCAGGTGGTC GAGCTCGGCC CGGTCAATGC CAGCATCCAC
AAGATCGACG AGCACATTGA CGTGGCCGAG ATCGAGACGC TGAAGAACAT CTACAAGCGC
ACGCTGGAGC GCCTCGAAGC GTCGCTCATC CAATGA
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| Protein sequence | MSRTLQLAEQ LISRPSVTPD DAGCQQILGE RLARLGFTLE TIESGPADFR VTNLWAVRRP
AGTAPTKTLV FAGHTDVVPT GPVEQWTSHP FTPTHRGGKL YGRGACDMKT SVAAFVVSIE
EFLAATPDPR LTLALLLTSD EEGPGVDGTV IVCNALAARG ETIDYCIVGE PTAVERCGDM
IKNGRRGTMS GKLTVHGVQG HIAYPHLAKN PVHAVAPALA ELVAINAAGG WDAGNAYFQP
TSWQISNFHA GTGASNVIPG SAVIDFNFRF STESTPESLQ KRVHAVLDAH GVDCTLAWTI
GGLPFLTTPG ELVSAVQAAI ADETGIATEL STSGGTSDAR FIAKICKQVV ELGPVNASIH
KIDEHIDVAE IETLKNIYKR TLERLEASLI Q
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