Gene Vapar_2693 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2693 
Symbol 
ID7972292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2836823 
End bp2837341 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content66% 
IMG OID644793281 
Productpeptidoglycan-associated lipoprotein 
Protein accessionYP_002944584 
Protein GI239815674 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID[TIGR02802] peptidoglycan-associated lipoprotein 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.671246 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGAAAC GTACGATTTA TTCGCTGGCC ATCGTGGCTC TGATTGCCGG CTGCTCGTCG 
GGCACCAAGC TCAACGACAC CCCGGTGACC GACCGCTCCG GCACCGCCGG CGGCCAGCAG
GGCAGCGCGA GCGCCGTGGC GCCCGTCACC ATCGATCCCA ATGCCGGTAC CGCTCAAGGG
CCGGTCGGTA TCGAACGGAT CGTCTATTTC GACTACGACA GCTATACGGT CAAGCCCGAG
TTCCAGTCCC TGATCGACGG CCACGCCCGT TTCCTCAAGG CCAACCCGCA GCGCCGCGTT
TCCATCGAAG GCCACACCGA CGACCGTGGC GGCCGCGAGT ACAACCTTGC ACTCGGCCAG
AAGCGCTCCG AGGCCGTCCG CCGCGCGCTG ACGCTCTTGG GCGTGAGCGA CGCCCAGATC
GAAGCCGTGA GCTTCGGCAA GGAAAAGCCC GCGGTCCAGG GCTCGGGCGA AGAAGCCTGG
GCACAGAACC GCCGCGCTGA AATCCGCTAC ACCCGGTGA
 
Protein sequence
MLKRTIYSLA IVALIAGCSS GTKLNDTPVT DRSGTAGGQQ GSASAVAPVT IDPNAGTAQG 
PVGIERIVYF DYDSYTVKPE FQSLIDGHAR FLKANPQRRV SIEGHTDDRG GREYNLALGQ
KRSEAVRRAL TLLGVSDAQI EAVSFGKEKP AVQGSGEEAW AQNRRAEIRY TR